Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_hsa_tpiA 1,299,499 Δ1,199 bp intergenic (+254/‑485) ychE → / → oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_hsa_tpiA 1299499–1300697 1300697 1–1199 49 [0] [0] 48 ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 12994980 (0.000)47 (1.140) 40/278 0.1 100% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913_3_hsa_tpiA 1300698 = 0 (0.000)intergenic (+1453/‑484) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

CTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCG  >  NC_000913_3_hsa_tpiA/1299350‑1299646
                                                                                                                                                    |                                                                                                                                                    
cttctCAAATTACCGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCCTCATGGTATTTTCGCCACATCATAATCCTGGGCTTACTGAAGAATAATTGAAATGATATTATTAATTCCACTGCTTTTGGTAGAGGAAAGTGCTAA                                                                                                                                                      >  2:609319‑M1/1‑149 (MQ=255)
    tcAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataa                                                                                                                                                  >  1:76508‑M1/1‑145 (MQ=255)
      aagttacaCTTAGTTATAAGGCTTGCCTTAACTGCTTCTCCTCACCAGCATGTTATTTTCGCAACATCATAATCCCGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataata                                                                                                                                                <  2:76246‑M1/146‑7 (MQ=255)
           aCAGTTAGTTATAAGGATTTCCTTAATTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaa                                                                                                                                           <  1:326701‑M1/149‑12 (MQ=255)
           aCAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaa                                                                                                                                           <  2:574830‑M1/149‑12 (MQ=255)
           aCAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaa                                                                                                                                           <  2:489739‑M1/149‑12 (MQ=255)
                 agttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATAAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgtta                                                                                                                                     <  1:526557‑M1/149‑18 (MQ=255)
                  gttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaa                                                                                                                                    >  1:599716‑M1/1‑131 (MQ=255)
                                 ttAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttc                                                                                                                     >  1:607813‑M1/1‑116 (MQ=255)
                                    aCTGCTTCTCCTCACTAACATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcact                                                                                                                  <  2:127372‑M1/149‑37 (MQ=255)
                                      tGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactac                                                                                                                >  1:507583‑M1/1‑111 (MQ=255)
                                           ctcctcACGATCATGTTATTTTCGCCACCTCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaa                                                                                                           <  1:288686‑M1/149‑44 (MQ=255)
                                              ctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcgtttcgatactggaactg                                                                                                        >  1:285184‑M1/1‑103 (MQ=255)
                                                  ccATCATGTTATTTTCTCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaat                                                                                                    <  1:406648‑M1/149‑51 (MQ=255)
                                                   catcatGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactattggaactgtaatg                                                                                                   >  1:87661‑M1/1‑98 (MQ=255)
                                                          ttATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaag                                                                                            <  1:316964‑M1/149‑59 (MQ=255)
                                                          ttATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaag                                                                                            >  1:488991‑M1/1‑91 (MQ=255)
                                                             ttttCGCCACATCATAATCCTGGGCTTGCTGAAGACTATTGGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagata                                                                                         >  1:181025‑M1/1‑88 (MQ=255)
                                                             ttttCGCCACATCATAATCCTGGGCTTGCTGAAGAATATCAGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagata                                                                                         >  1:180962‑M1/1‑88 (MQ=255)
                                                             ttttCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagata                                                                                         <  1:463154‑M1/149‑62 (MQ=255)
                                                                        tcatAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttag                                                                              <  1:317588‑M1/149‑73 (MQ=255)
                                                                           tAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaatatagacatgcttagcca                                                                           >  1:334601‑M1/1‑74 (MQ=255)
                                                                            aaTCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttcaattattgtgcatttcactaatggaactgtaataagaaaagatagacaagattagccaa                                                                          >  1:723303‑M1/1‑73 (MQ=255)
                                                                                        gCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGATTGTGTTGGaatataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgat                                                              <  1:743631‑M1/149‑89 (MQ=255)
                                                                                             agaaTAATTGAAAGGTTATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaagtattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaat                                                         <  1:482670‑M1/149‑94 (MQ=255)
                                                                                               aataatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatcactattagattgaattg                                                       >  1:60210‑M1/1‑54 (MQ=255)
                                                                                                  aatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaa                                                    >  2:243539‑M1/1‑51 (MQ=255)
                                                                                                     tgtaatgaTATTATTAATCTCCTTGCTTTTGGTAGAGGAAAGTGGTAAataataatcaattgttaaattattgtgcatgtcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagat                                                 <  2:299980‑M1/146‑102 (MQ=255)
                                                                                                     tcaaatgTTCTTATTAATTCCAATGTCCTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttcgccaaactctatttgattggattcaaagtt                                                 <  2:508261‑M1/147‑102 (MQ=255)
                                                                                                     tGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcattcaactactgtaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagat                                                 <  1:143419‑M1/149‑102 (MQ=255)
                                                                                                       atatgATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTCAataataatcaattgttaaattatggtgcatttcacttctggatctgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgt                                               <  2:148573‑M1/147‑104 (MQ=255)
                                                                                                       aaaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGGTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgt                                               <  2:148618‑M1/149‑104 (MQ=255)
                                                                                                          tGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAatagtaatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttg                                            >  1:682882‑M1/1‑43 (MQ=255)
                                                                                                           gttattattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgt                                           <  1:468271‑M1/147‑108 (MQ=255)
                                                                                                                 attaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcaccactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttg                                            <  1:578791‑M1/142‑107 (MQ=255)
                                                                                                                 attaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcaccactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttg                                            >  2:578791‑M1/1‑36 (MQ=255)
                                                                                                                       tCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggat                               <  1:319692‑M1/149‑120 (MQ=255)
                                                                                                                       tCCACTCCCTTTGGTAGAGGAAAGGTCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggat                               <  2:285184‑M1/149‑120 (MQ=255)
                                                                                                                         cACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaa                                                          >  2:256432‑M1/1‑28 (MQ=255)
                                                                                                                         cACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaa                                                          <  1:256432‑M1/120‑93 (MQ=255)
                                                                                                                          aCTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgca                            <  2:599716‑M1/149‑123 (MQ=255)
                                                                                                                             gCCTTTGGTAGAGGAAAGTGCTAAataataatcactttttaaagtattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagc                         <  1:396990‑M1/149‑126 (MQ=255)
                                                                                                                                tttGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcacgctat                      >  1:441075‑M1/1‑21 (MQ=255)
                                                                                                                                tttGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctat                      <  1:289577‑M1/149‑129 (MQ=255)
                                                                                                                                    gTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatacttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagat                  >  2:569199‑M1/1‑17 (MQ=255)
                                                                                                                                         ggAAAGTGCTAAataataatcaattgttacattattgtgcatttcactactggaactgtaatcagaaaagatagccatgcttagccaatctctatttgatttaattgaaagatgtttgttaaggcatggatgccagctatcgattcggt             >  2:369001‑M1/1‑12 (MQ=255)
                                                                                                                                          gAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagtttctgat            >  1:505970‑M1/1‑11 (MQ=255)
                                                                                                                                           aaaGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgata           <  1:243539‑M1/149‑140 (MQ=255)
                                                                                                                                                    aataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaata  >  2:547748‑M1/1‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
CTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCG  >  NC_000913_3_hsa_tpiA/1299350‑1299646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: