Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_hsa_tpiA 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_hsa_tpiA 257908–258674 258683 10–776 61 [0] [1] 63 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 2579070 (0.000)58 (1.020) 48/266 0.2 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913_3_hsa_tpiA 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

CTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATT  >  NC_000913_3_hsa_tpiA/257762‑258055
                                                                                                                                                 |                                                                                                                                                    
cTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt                                                                                                                                                   <  2:199006‑M1/149‑4 (MQ=255)
      ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCTGATTGATCAAAAAATTTACCGCTCTAGGCCCGTATATTCGTGAAGGTAagtgcaaag                                                                                                                                             >  2:452964‑M1/1‑140 (MQ=255)
          aaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa                                                                                                                                         <  2:688933‑M1/149‑14 (MQ=255)
           aaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagatgat                                                                                                                                        >  1:361086‑M1/1‑135 (MQ=255)
           aaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat                                                                                                                                        <  2:373720‑M1/149‑15 (MQ=255)
                  tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAGAAATAAACCGCACTATGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattct                                                                                                                                 >  1:30993‑M1/1‑128 (MQ=255)
                     cttttcCCAATTTCGTAAAACAGTTGCCTCACAACAGGAGATAGCAAGGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt                                                                                                                              <  1:54147‑M1/148‑25 (MQ=255)
                      ttttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACTTTACCGAGTTGACACCCGCAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTACTGAAGGTAagtgaaaagatacttaattattttt                                                                                                                             >  1:209479‑M1/1‑124 (MQ=255)
                      gtctgccAATTTGGTAAAACAGTTGCATCACAACAGGATATAGCAATGACGCACCCTATTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTCGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt                                                                                                                             <  2:386481‑M1/146‑26 (MQ=255)
                            cAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACTGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattg                                                                                                                       >  2:979829‑M1/1‑118 (MQ=255)
                                    tAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctg                                                                                                               >  1:1057888‑M1/1‑110 (MQ=255)
                                     aaaaCAGTTGGATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt                                                                                                              <  2:888858‑M1/149‑41 (MQ=255)
                                        aCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGCTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAgggccaaaggtaatcgattctgtttccaatgcttggctctatg                                                                                                           >  1:359189‑M1/1‑106 (MQ=255)
                                           gTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAAAGCAGATTGATCAGAAAATTTACCGCACTAGGCCCGTATATTCGTGAATTTAattgcaaagataatcgattctttttcgattgtctggctgtatgcgt                                                                                                        >  2:330415‑M1/1‑103 (MQ=255)
                                            ttGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTGACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtc                                                                                                       <  1:979829‑M1/149‑48 (MQ=255)
                                              gCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGCGCAGTTTTGTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaa                                                                                                     >  1:837572‑M1/1‑100 (MQ=255)
                                               cATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac                                                                                                    <  1:967377‑M1/149‑51 (MQ=255)
                                                 ttctaacaggagATAGAAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgt                                                                                                  <  2:1057888‑M1/145‑53 (MQ=255)
                                                  cacaACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaggataatcgattcttcttcgattgtctggctgtatgcgtcaacgtg                                                                                                 <  1:841627‑M1/149‑54 (MQ=255)
                                                  cacaACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtg                                                                                                 >  1:122266‑M1/1‑96 (MQ=255)
                                                          gagaTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggc                                                                                         >  1:619336‑M1/1‑88 (MQ=255)
                                                            aatAGCAACTACGATTCTGAGTGGACACCGGAATGGCAGATTGATTAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggttgtatgcgtcaacgtggaaccggcac                                                                                       <  2:318104‑M1/148‑64 (MQ=255)
                                                                  aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaag                                                                                 >  1:1037293‑M1/1‑80 (MQ=255)
                                                                       cGTGACCGAGTGGACACCGTAAGAGCAGATTGAGCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                            <  2:777965‑M1/149‑75 (MQ=255)
                                                                        gTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTTAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtg                                                                           >  1:1450‑M1/1‑74 (MQ=255)
                                                                           aCCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaat                                                                        >  1:303903‑M1/1‑71 (MQ=255)
                                                                           aCCGAGTGGACACCCGAAGAGCAGACTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaat                                                                        <  1:1045967‑M1/149‑79 (MQ=255)
                                                                            ccGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagggcgggaatt                                                                       >  2:520176‑M1/1‑70 (MQ=255)
                                                                             cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgc                                                                              <  2:606212‑M1/141‑73 (MQ=255)
                                                                             cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgc                                                                              >  1:606212‑M1/1‑69 (MQ=255)
                                                                                   gACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggatgtatgcgtgaacgtgaaacctgcaccgtaagtgcgtgaattctggggc                                                                >  2:743255‑M1/1‑63 (MQ=255)
                                                                                     cacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctg                                                              <  1:1058458‑M1/149‑89 (MQ=255)
                                                                                        ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtg                                                           >  1:857176‑M1/1‑58 (MQ=255)
                                                                                         cGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtgg                                                          >  1:473121‑M1/1‑57 (MQ=255)
                                                                                             gagCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatgg                                                      >  1:674485‑M1/1‑53 (MQ=255)
                                                                                                cAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagc                                                   >  1:819222‑M1/1‑50 (MQ=255)
                                                                                                 aGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagct                                                  <  2:619336‑M1/149‑101 (MQ=255)
                                                                                                  gATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctg                                                 <  2:122266‑M1/149‑102 (MQ=255)
                                                                                                   aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagct                                                  >  1:1041374‑M1/1‑47 (MQ=255)
                                                                                                   aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagct                                                  <  2:1041374‑M1/147‑101 (MQ=255)
                                                                                                   aTTGATCAAAAAATTTACCGCACTAGGCACGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgg                                                >  1:99249‑M1/1‑47 (MQ=255)
                                                                                                        tCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcg                                           <  2:353934‑M1/149‑108 (MQ=255)
                                                                                                          aaaacaTTGCCCGCACTAGCCCTGTATATTCGTGAAGGGAagtgcaaagataatcgattcgtgttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                         <  2:360697‑M1/149‑110 (MQ=255)
                                                                                                          aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTgtgtcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                          <  2:113145‑M1/149‑110 (MQ=255)
                                                                                                          aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatgtagctggaggcgca                                         >  2:357833‑M1/1‑40 (MQ=255)
                                                                                                          aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                         >  1:1060149‑M1/1‑40 (MQ=255)
                                                                                                          aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                         >  2:968852‑M1/1‑40 (MQ=255)
                                                                                                          aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                         >  2:338929‑M1/1‑40 (MQ=255)
                                                                                                          aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctgg                                                             >  1:747707‑M1/1‑40 (MQ=255)
                                                                                                          aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctgg                                                             <  2:747707‑M1/129‑90 (MQ=255)
                                                                                                          aaaaaaTTGAACGCACGAGGGCCGTAGATTCAGGAAGGTAagtgcaaatataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggccccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                         <  2:209479‑M1/149‑110 (MQ=255)
                                                                                                           aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagcggaaagcgcag                                        >  2:302546‑M1/1‑39 (MQ=255)
                                                                                                                    ccGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgactctcggtggagtgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgt                               <  1:569560‑M1/149‑120 (MQ=255)
                                                                                                                     cGCACTAGGCCCGTATATTCGTGGAGTTGggtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggggctggaagcgcggggatcccgtt                              >  2:716645‑M1/1‑29 (MQ=255)
                                                                                                                     cGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtt                              >  2:336310‑M1/1‑29 (MQ=255)
                                                                                                                     cGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagagaatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtt                              <  1:654917‑M1/149‑121 (MQ=255)
                                                                                                                                   atatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttac                <  1:594139‑M1/149‑135 (MQ=255)
                                                                                                                                       tCGGGAAGGTAagtgcaaatattatcgtttctttttcgattgtctggctgtatgcgtcaacgtgaaaccggctccggaagtgcgtgaattctggggctggtggatgtagctggaagcgcaggaatcccgttttacctacagttaccagt            <  2:777549‑M1/149‑139 (MQ=255)
                                                                                                                                           gAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttgg        >  1:630533‑M1/1‑7 (MQ=255)
                                                                                                                                            aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggt       <  1:981882‑M1/149‑144 (MQ=255)
                                                                                                                                                 aagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgtt  <  1:512957‑M1/149‑149 (MQ=255)
                                                                                                                                                 |                                                                                                                                                    
CTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATT  >  NC_000913_3_hsa_tpiA/257762‑258055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.