New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 12994980 (0.000)80 (1.020) 64/270 0.2 100% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913_3_hsa_tpiA 1300698 = 0 (0.000)intergenic (+1453/‑484) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

CTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATT  >  NC_000913_3_hsa_tpiA/1299353‑1299635
                                                                                                                                                 |                                                                                                                                         
ctcAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAata                                                                                                                                        <  1:1376914‑M1/149‑4 (MQ=255)
 tcAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTATAGGAAAGTGCTAAataa                                                                                                                                       >  1:1369761‑M1/1‑145 (MQ=255)
 tcAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataa                                                                                                                                       >  1:1424208‑M1/1‑145 (MQ=255)
   aaaTTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataata                                                                                                                                     <  2:1134343‑M1/149‑7 (MQ=255)
   aaaTTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataata                                                                                                                                     <  1:415181‑M1/149‑7 (MQ=255)
          agttagttATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTGGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGTTAGAGGAAAGTGCTAAataataatcaatt                                                                                                                              >  2:419550‑M1/1‑136 (MQ=255)
           gttagttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTGGGTAGAGGAAAGGGCTAAataagaatcaattg                                                                                                                             >  1:951198‑M1/1‑135 (MQ=255)
            ttagttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgt                                                                                                                            >  2:1283793‑M1/1‑134 (MQ=255)
            ttagttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgt                                                                                                                            >  1:1340314‑M1/1‑134 (MQ=255)
              agttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgtta                                                                                                                          >  2:61039‑M1/1‑132 (MQ=255)
               gttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaa                                                                                                                         >  1:798726‑M1/1‑131 (MQ=255)
                ttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGTCTTGCTGAAGAATAATTGAAATCATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaa                                                                                                                        >  1:1027730‑M1/1‑130 (MQ=255)
                   taAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGGTTGCTGATGAATAATTGAAATGATATTATTAATTCTACTGACTTTGTTAGAGTAAAGTGCGAAataataatcaattgttaaatta                                                                                                                     >  2:846186‑M1/1‑127 (MQ=255)
                   taAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatta                                                                                                                     >  2:1019594‑M1/1‑127 (MQ=255)
                      ggATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattg                                                                                                                  >  1:956843‑M1/1‑124 (MQ=255)
                         tttCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgc                                                                                                               >  1:845983‑M1/1‑121 (MQ=255)
                           tCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcat                                                                                                             <  1:1036901‑M1/149‑31 (MQ=255)
                           tCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcat                                                                                                             <  1:460738‑M1/149‑31 (MQ=255)
                              ttAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttc                                                                                                          <  2:956843‑M1/149‑34 (MQ=255)
                              ttAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgt                                                                                                                 <  2:1170415‑M1/142‑27 (MQ=255)
                              ttAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgt                                                                                                                 >  1:1170415‑M1/1‑116 (MQ=255)
                                aaCTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcaattact                                                                                                        >  2:1289453‑M1/1‑114 (MQ=255)
                                  cTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcacta                                                                                                      >  1:844200‑M1/1‑112 (MQ=255)
                                           ctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactg                                                                                             >  1:110085‑M1/1‑103 (MQ=255)
                                           ctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactg                                                                                             >  1:369535‑M1/1‑103 (MQ=255)
                                             cACCATCATGTTATTTTCGCCACATTCTAAATCTTGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttatattattgtggatttcactactggaactgca                                                                                           >  2:528031‑M1/1‑101 (MQ=255)
                                              aCCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattttgcatttcactactggaactgtaa                                                                                          >  1:980389‑M1/1‑100 (MQ=255)
                                               ccATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaat                                                                                         <  1:1377833‑M1/149‑51 (MQ=255)
                                               ccATCATGTTATTTTCGCCACACCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTTGTAGAAGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaat                                                                                         <  1:846186‑M1/149‑51 (MQ=255)
                                                     tGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattttgcatttcactactggaactgtaatcagaaa                                                                                   >  2:555206‑M1/1‑93 (MQ=255)
                                                     tGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtattcagaaa                                                                                   >  1:535619‑M1/1‑93 (MQ=255)
                                                     tGTTATTTTCGCCAAATCATAATCCTGGGCCTGCTGACGACTCAATGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaa                                                                                   <  2:1369761‑M1/149‑57 (MQ=255)
                                                         aTTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagat                                                                               >  2:278323‑M1/1‑89 (MQ=255)
                                                            ttCGCCACATCATAATCCTCGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAagaataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagataga                                                                            <  1:785025‑M1/149‑64 (MQ=255)
                                                                ccaaagcataaacctGGGGCTGCTGAAGAATAATTGAAATGATATTATTAATTCCCCTGCCTTTGGTAGAGGAAAGTGCTAAacaataatcaattgataaattattgtgcatttcactactggaactgtaatcagaaaagatagacatg                                                                        <  2:16620‑M1/143‑68 (MQ=255)
                                                                 cacaTCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATGCCAATGCCTTTGGTAGAGGAAAGTGCTAAatcataatcaattgttaaattattgttcatttcactactggaactgtaatcagaaaagatagacatgc                                                                       <  2:1357765‑M1/149‑69 (MQ=255)
                                                                    atcatAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgctta                                                                    >  1:1061806‑M1/1‑78 (MQ=255)
                                                                      catAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagc                                                                  <  1:1283793‑M1/149‑74 (MQ=255)
                                                                       atAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagcc                                                                 >  2:793606‑M1/1‑75 (MQ=255)
                                                                       atAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagac                                                                 >  2:792583‑M1/1‑75 (MQ=255)
                                                                       atAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttca                                                                                                         >  2:959353‑M1/1‑75 (MQ=255)
                                                                       atAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttca                                                                                                         <  1:959353‑M1/109‑35 (MQ=255)
                                                                          aTCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaat                                                              <  1:191677‑M1/149‑78 (MQ=255)
                                                                          aTCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaat                                                              <  2:1213553‑M1/149‑78 (MQ=255)
                                                                             cTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagctaatctc                                                           >  2:504937‑M1/1‑69 (MQ=255)
                                                                             cTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctc                                                           >  2:1301660‑M1/1‑69 (MQ=255)
                                                                              tGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaa                                                                                                <  1:480999‑M1/111‑44 (MQ=255)
                                                                              tGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaa                                                                                                >  2:480999‑M1/1‑68 (MQ=255)
                                                                                ggCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctat                                                        <  2:1285671‑M1/149‑84 (MQ=255)
                                                                                 gCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcacgactggaactgtaatcagaaaagatagacatgcttagccaatctctatt                                                       <  1:1261482‑M1/149‑85 (MQ=255)
                                                                                 gCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGCAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatt                                                       <  1:1234394‑M1/149‑85 (MQ=255)
                                                                                   ttGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattttgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttg                                                     >  1:1053292‑M1/1‑63 (MQ=255)
                                                                                    tGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttga                                                    <  1:88072‑M1/149‑88 (MQ=255)
                                                                                     gCTGAAGAATAAATGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgat                                                   <  2:691219‑M1/149‑89 (MQ=255)
                                                                                      cTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgatt                                                  <  1:66807‑M1/149‑90 (MQ=255)
                                                                                      cTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgatt                                                  <  2:225550‑M1/149‑90 (MQ=255)
                                                                                      cTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgatt                                                  >  1:225550‑M1/1‑60 (MQ=255)
                                                                                         aagaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaa                                               >  2:726180‑M1/1‑57 (MQ=255)
                                                                                             ataatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattga                                           <  2:110085‑M1/149‑97 (MQ=255)
                                                                                                atTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaag                                        >  1:477959‑M1/1‑50 (MQ=255)
                                                                                                  tGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagat                                      <  2:1201735‑M1/149‑102 (MQ=255)
                                                                                                    aaaTGATATTATTAATTCCACTGCCGTTGGTAGAGGGAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgt                                    <  1:1184202‑M1/149‑104 (MQ=255)
                                                                                                     aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatccactgcggcgtgattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtt                                   <  1:1402348‑M1/149‑105 (MQ=255)
                                                                                                     aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataataacaaagcaaagtattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtt                                   <  1:1402344‑M1/149‑105 (MQ=255)
                                                                                                      aTGAAATTATCAATTCCACTGCCTTTGGTAGAGGAAAGTGGTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgttt                                  <  1:572524‑M1/149‑106 (MQ=255)
                                                                                                            ttattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaag                            <  1:61039‑M1/149‑112 (MQ=255)
                                                                                                              attaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaaacagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgttcgttaaggc                          >  1:1269676‑M1/1‑36 (MQ=255)
                                                                                                                  aTTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatgg                      <  1:615270‑M1/149‑118 (MQ=255)
                                                                                                                      cACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattcaaagatatttcttaaggcatcgatcc                  >  2:88063‑M1/1‑28 (MQ=255)
                                                                                                                        cTGCCTTTGGTAGGAGAAAGTGATAAataataatcaattgttaaattattgtgcatttcactactggaactgtaataagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaa                <  1:366659‑M1/149‑124 (MQ=255)
                                                                                                                        cTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactggaatcagaaaagatagacattcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaa                <  2:845983‑M1/149‑124 (MQ=255)
                                                                                                                          gCCTTTGGTAGAGGAAAGTGCTAAataataatcagttgttaaattattgtgcattgcactactagaactgtaatcagaaaatatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagc              <  1:1271578‑M1/149‑126 (MQ=255)
                                                                                                                           ccTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggaggcagacg             >  1:1018043‑M1/1‑23 (MQ=255)
                                                                                                                            cTTTGGTAGAGGNAAGTGCTACataataancaattgttaaattatggtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatatctattggattgaattgaaagatgtttgttaaggcatggatgcaagcta            <  1:488643‑M1/149‑128 (MQ=255)
                                                                                                                             gttgGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctat           <  2:1424208‑M1/148‑129 (MQ=255)
                                                                                                                               tGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgttcatttcactactggaactgtaatcagaaaagatagacatgcttagtcaatctctgatttattgaattgaaagatgtttgttaaggcatggatgcaagctatag         <  1:703820‑M1/149‑131 (MQ=255)
                                                                                                                                ggTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctataga        <  1:1289453‑M1/149‑132 (MQ=255)
                                                                                                                                   agagGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattc     <  2:798726‑M1/149‑135 (MQ=255)
                                                                                                                                    gagGAAAGTGTTAAatattaatcaagtgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattct    <  1:1106918‑M1/149‑136 (MQ=255)
                                                                                                                                    gagGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattct    >  2:387072‑M1/1‑14 (MQ=255)
                                                                                                                                               tAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctga  >  2:833651‑M1/1‑3 (MQ=255)
                                                                                                                                               tAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctga  <  1:833651‑M1/140‑138 (MQ=255)
                                                                                                                                               tAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgc                  <  2:1202631‑M1/124‑122 (MQ=255)
                                                                                                                                               tAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgc                  >  1:1202631‑M1/1‑3 (MQ=255)
                                                                                                                                                 aataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgatt                                                  <  2:554094‑M1/90‑90 (MQ=255)
                                                                                                                                                 aataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgatt                                                  >  1:554094‑M1/1‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                         
CTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATT  >  NC_000913_3_hsa_tpiA/1299353‑1299635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.