New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	3981187 =	61 (1.230)	4 (0.090)	4/264	6.6	6.3%	coding (301/1386 nt)	yifK	putative APC family amino acid transporter
	?	NC_000913_3_hsa_tpiA	3981219 =	62 (1.340)					coding (333/1386 nt)	yifK	putative APC family amino acid transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGAACTCGATTTCGCCGTACAACCGCACCGCCGCCAGATTCGCCAACGCCACCAGCGCCACTGCGATCAATGCGGGTATCCACTGCGCCATCTCCGGGAACCAGAACTGGACATAAACGCCAATGGCGGTGATTTCAGAGATCCCCACCGCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_hsa_tpiA/3981340‑3981187 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgccatTGGCGTTTATGTCCAGTTCTGGTTCCCGGAGATGGCGCAGTGGATACCCGCATTGATCGCAGTGGCGCTGGTGGCGTTGGCGAATCTGGCGGCGGTGCGGTTGTACGGCGAAATCGAGTTCTGGTTCGCGATGATCAAAGTCACCACG  >  NC_000913_3_hsa_tpiA/3981219‑3981366                                                                                                                                                                                                                                                                                                                AGAACTCGATTTCGCCGTACAACCGCACCGCCGCCAGATTCGCCAACGCCACCAGCGCCACTGCGATCAATGCGGGTATCCACTGCGCCATCTCCGGGAACCAGAACTGGACATAAACGCCAATGGCGGTGATTTCAGAGCTCCCCACC                                                                                                                                                           >  2:549263/1‑149     CTCGATTTCGCCGTACAACCGCACCGCCGCCAGATTCGCCAACGCCACCAGCGCCACTGCGATCAATGCGGGTATCCACTGCGCCATCTCCGGGAACCAGAACTGGACATAAACGCCAATGGCGGTGATTTCAGAGATCCCCACCGCCA                                                                                                                                                       >  2:852205/1‑149      TCGATTTCGCCGTACAACCGCACCGCCGCCAGATTCGCCAACGCCACCAGCGCCACTGCGATCAATGCGGGTATCCACTGCGCCATCTCCGGGAACCAGAACTGGACATCAACGCCAAGGCCGGGGATTTCAGAGATCCACACCCCCAc                                                                                                                                                      >  2:718362/1‑148                                                                                                                         CAATGGCGGTGATTTCAGAGATCCCCACCGCCATTGGCGTTTATGTCCAGTTCTGGTTCCCGGAGCTGGGGCAGTGGATACCCGCATTGATCGCAGTGGCGCTGGTGGCGTTGGCGAATCTGGCGGCGGTGCGGTTGTACCGCGAAAac                                   >  2:245456/1‑147                                                                                                                           ATGGCGGTGATTTCAGAGATCCCCACCGCCATTGGCGTTTATGTCCAGTTCTGGTTCCCGGAGATGGCGCAGTGGATACCCGCATTGATCGCAGTGGCGCTGGTGGCGTTGG                                                                      <  1:502014/112‑1                                                                                                                           ATGGCGGTGATTTCAGAGATCCCCACCGCCATTGGCGTTTATGTCCAGTTCTGGTTCCCGGAGATGGCGCAGTGGATACCCGCATTGATCGCAGTGGCGCTGGTGGCGTTGG                                                                      >  2:502014/1‑112                                                                                                                                                 CCACCCCCATTGGGGGTTGTGTCGGGTTCTGGTTCCCGGGGGTGGCGTAGTGGATGCCCGCATTTATCGGAGTGGCGCTGGTGGCTTTGGCGAATCTGGCGGCGGTGCGGTTGTACGGCGAAATCGAGTTCTGGTTCGCGATGATTAAA           <  2:419795/149‑1                                                                                                                                                   ACCGCCATTGGCGTTTATGTCCAGTTCTGGTTCCCGGAGATGGCGCAGTGGATACCCGCATTGATCGCAGTGGCGCTGGTGGCGTTGGCGAATCTGGCGGCGGTGCGGTTGTCCGGCGAAATCGAGTTCTGGTTCGCGATGATCAAAGT         >  1:701802/1‑149                                                                                                                                                   ACCGCCATTGGCGTTTATGTCCAGTTCTGGTTCCCGGAGATGGCGCAGTGGATACCCGCATTGATCGCAGTGGCGCTGGTGGCGTTGGCGAATCTGGCGGCGGTGCGGTTGTACGGCGAAATCGAGTTCTGGTTCGCGATGATCAAAGT         >  2:375422/1‑149                                                                                                                                                    CCGCCATTGGCGTTTATGTCCAGTTCTGGTTCCCGGAGATGGCGCAGTGGATACCCGCATTGATCGCAGTGGCGCTGGTGGCGTTGGCGAATCTGGTGGCGGTGCGGTTGTACGGCGAAATCGAGTTCTGGTTCGCGATGATCAAAGTC        <  1:246504/149‑1                                                                                                                                                       CCATTGGCGTTTATGTCCAGTTCTGGTTCCCGGAGATGGCGCAGTGGATACCCGCATTGATCGCAGTGGCGCTGGTGGCGTTGGCGAATCTGGCGGCGGTGCGGTTGTACGGCGAAATCGAGTTCTGGTTCGCGATGATCAAAGTCACC     <  1:375422/149‑1                                                                                                                                                        CATTGGCGTTTATGTCCAGTTCTGGCTCCCGGAGATGTCGCTGTAAATAACCCCATTGATCGCAGTGGCGCTTGTGGCGTTGGCGAATCTGGCGGCGGTGCGGTTGTACGGCGAAATCGAGTTCTGGTTCGCGATGATCAAAGTCACCA    <  1:198605/149‑1                                                                                                                                                          TTGGCGTTTATGTCCAGTTCTGGTTCCCGGAGAGGGAGCAGGGGATACCCGCATTGGTCGCAGTGGCGCGGGTGGCGTTGGCGAATCTGGCGGCGGTGCGGTTGTACGGCAGAACCGACGTCTGGTTCGAGATGATCACAGCCACCACG  >  2:731563/1‑149                                                                                                                                                          TTGGCGTCTATGTCTAGTTCTGGTTCCCGGAGATGGCGCAGTGGATACCCGCATTGATCGCGGTGTCGCTGGTGGCGTTGGCGAATCTGGCGGCGGTGCGGTGGTAGGGAGGAATCGGGTGCTGGTTGGCGCTGATCAAAGTCACCAgg  >  2:280322/1‑147                                                                                                                                                                                                                                                                                                                AGAACTCGATTTCGCCGTACAACCGCACCGCCGCCAGATTCGCCAACGCCACCAGCGCCACTGCGATCAATGCGGGTATCCACTGCGCCATCTCCGGGAACCAGAACTGGACATAAACGCCAATGGCGGTGATTTCAGAGATCCCCACCGCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_hsa_tpiA/3981340‑3981187 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgccatTGGCGTTTATGTCCAGTTCTGGTTCCCGGAGATGGCGCAGTGGATACCCGCATTGATCGCAGTGGCGCTGGTGGCGTTGGCGAATCTGGCGGCGGTGCGGTTGTACGGCGAAATCGAGTTCTGGTTCGCGATGATCAAAGTCACCACG  >  NC_000913_3_hsa_tpiA/3981219‑3981366

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.