New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	1961815 =	57 (1.150)	6 (0.130)	6/262	5.6	10.2%	intergenic (+20/‑157)	argS/yecT	arginyl‑tRNA synthetase/uncharacterized protein
	?	NC_000913_3_hsa_tpiA	1961845 =	53 (1.150)					intergenic (+50/‑127)	argS/yecT	arginyl‑tRNA synthetase/uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTAAATTCAACCGTTATCGTTTCCCTGGGGCCGGATATTACGCTTCTGGCCTCTTATCCAACAGTGAGAAAACAATGGCATGTCCATTTTCAGAATACATTTAGATGGCAATAAAAAAGCCTGATCGGCTAACCCTGATCAGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_hsa_tpiA/1961960‑1961815 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcaggcttTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATATCCGGCCCCAGGGAAACGATAACGGTTGAATTTAAGGAATACCGCAGTGTTTAAATTTCTTGTATT  >  NC_000913_3_hsa_tpiA/1961845‑1961991                                                                                                                                                                                                                                                                                                       TTAAATTCAACCGTTATCGTTTCCATGGGGCCGGATATTACGCTTGTGGCCTCTTATCCAACAGTGAGAAATCAATGGCATGTCCATTTTCAGAATACATTTAGATGGCAATAAAAAAGCCTGATCGGCTAACCCTGATCGGGCTTaac                                                                                                                                                  <  2:115552/149‑4                                                                          AATGGCATGTCCATTTTCAGAATACATTTAGATGGCAATAAAAAAGCATGATCGGCTAACCCTGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGCCATGCCATTGCTTTCTTCCTGCTGGATTATAGGTCAGAAcct                                                                         >  2:776967/1‑146                                                                                                               ATAAAAAAGCCTGATCGGCTAACCCTGATCAGGCTTTTTTAT                                                                                                                                               <  1:134164/42‑1                                                                                                               ATAAAAAAGCCTGATCGGCTAACCCTGATCAGGCTTTTTTAT                                                                                                                                               >  2:134164/1‑42                                                                                                                      AGCCTGATCGGCTAACCCTGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCAAGAAGAGTAATATCCGGCCACAGGGAAACGATAAAGGTTGAATTTAAGTAA                             >  2:695083/1‑149                                                                                                                         CTGATCGGCTAACCCTGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATG                                                                                                                     <  1:673224/58‑1                                                                                                                         CTGATCGGCTAACCCTGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATG                                                                                                                     >  2:673224/1‑58                                                                                                                                         GATCAGGCTTTTTTATTGCCATCTGAATGCATTCTGAAAATGGAAATGTCATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATTTCCTGTGCGAGGTAAACGATAACGGTTGAATTTAAGGTATACCGCAGTGTTTAAATTT          <  2:186109/149‑1                                                                                                                                           TCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATATCCGGCCCCAGGGAAACGATAACGGTTGAATTTAAGGAATACCGCAGTGTTTAAATTTCT        <  1:496511/149‑1                                                                                                                                           TCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATATCCGGCCCCAGGGAAACGATAACGGTTGAATTTAAGGAATACCGCAGTGTTTAAATTTCT        >  2:551300/1‑149                                                                                                                                            CAGGCTTTTTTTTTGCCATCTAAATGTATTCTGAAAATGGACATGACATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATATCCGGCCCCAGGGAAACGATAACGGTTGAATTTAAGGAATACCGCAGTGTTTAAATTTCTT       <  1:288594/149‑1                                                                                                                                             AGGCTTTTTTATTGCCATTTAAGTGTATGCGGAGAATGGATCTGCGGCGGCTGTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATATGCGGCCCCAGGGAAACGATAACGGTTGAATTTAAGGAATACCGCAGTGTTTAAATTTCTTG      <  1:198184/149‑1                                                                                                                                                 TTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGCTAAGAGGCCAGAAGCGTAATATCCGGCACCAGGGAAACGATAACGGTTGCATTTTAGGAATACCGCAGTGTTTCAATTTCTTGTCTT  >  2:243630/1‑149                                                                                                                                                 TTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATATCCGGCCCCAGGGAAACGATAACGGTTGAATTTAAGGAATACCGCAGTGTTTAAAT            >  1:584380/1‑139                                                                                                                                                 TTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATATCCGGCCCCAGGGAAACGATAACGGTTGAATTTAAGGAATACCGCAGTGTTTAAAT            <  2:584380/139‑1                                                                                                                                                                                                                                                                                                       TTAAATTCAACCGTTATCGTTTCCCTGGGGCCGGATATTACGCTTCTGGCCTCTTATCCAACAGTGAGAAAACAATGGCATGTCCATTTTCAGAATACATTTAGATGGCAATAAAAAAGCCTGATCGGCTAACCCTGATCAGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_hsa_tpiA/1961960‑1961815 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcaggcttTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATATCCGGCCCCAGGGAAACGATAACGGTTGAATTTAAGGAATACCGCAGTGTTTAAATTTCTTGTATT  >  NC_000913_3_hsa_tpiA/1961845‑1961991

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.