New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA 3648348 =53 (1.070)4 (0.090) 4/260 6.6 7.5% noncoding (55/84 nt) agrB antisense sRNA antitoxin for the DinQ toxin
?NC_000913_3_hsa_tpiA 3648375 = 50 (1.100)noncoding (82/84 nt) agrB antisense sRNA antitoxin for the DinQ toxin
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGACTTATCCGCTTCGAAGA  >  NC_000913_3_hsa_tpiA/3648202‑3648495
                                                                                                                                                  |                                                                                                                                                   
gTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaaa                                                                                                                                                   >  2:483788/1‑149 (MQ=255)
              taCCGAAGTGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAg                                                                                                                                     >  1:762174/1‑149 (MQ=255)
                  gAAGTCCTCCCTCCGCCAGCTAAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAATTAAAAAACCGCCGCAAAGTCgg                                                                                                                                 >  2:26289/1‑149 (MQ=255)
                        ctccctccGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTTTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACACAAAGTCCGtatgtt                                                                                                                           >  2:512212/1‑144 (MQ=255)
                        ctccctccGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCAACTGGCTAATAATATTGCGCAATCCCTTAAGAAATCCTTCCCACCAGCCATAGCCACCGCCTCAGCCCTGGAACGCAAAAAACCGACTCAAAGTCGTattttt                                                                                                                           >  2:512395/1‑149 (MQ=255)
                           cctccGCCAGCTGAAGAAATCGCTAATTCTTGCCATGTTAGCCCCTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTACAAACCCGACGCAAAGTCGGTTTTTTTAc                                                                                                                        >  2:8387/1‑149 (MQ=255)
                           cctccGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTAc                                                                                                                        >  2:616847/1‑149 (MQ=255)
                           cctccGCCAGCTGAAGAAATCGCTAATTAGTCGGAAGTTATGCACTGGGTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTAc                                                                                                                        <  2:181729/149‑1 (MQ=21)
                                    gCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGAtt                                                                                                               <  1:288378/149‑1 (MQ=255)
                                         agaaATCGCTAATTCTTGCAATGTTAGCCACTTGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGAc                                                                                                          <  1:89677/149‑1 (MQ=255)
                                           aaaTCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGAcct                                                                                                        >  1:529357/1‑149 (MQ=255)
                                             aTCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATCCCGAcctcc                                                                                                      >  2:439398/1‑149 (MQ=255)
                                                gCTAATTCTTGCAATGTTAGCAACTGGCTAATAGTATTGAGCTGTTAGTTAAGAACTCTCTCAATCCAGACAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAATTCGGTTTTTGTACCTCCTGTTGCAGACCGACttt                                                                                                   >  2:472072/1‑149 (MQ=25)
                                                  tAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCa                                                                                                 <  2:762174/149‑1 (MQ=255)
                                                   aaTTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCaa                                                                                                <  2:701201/149‑1 (MQ=255)
                                                     ttCTTGCAATGGTAGCCACTGGGTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAAt                                                                                              <  2:565739/149‑1 (MQ=255)
                                                        ttGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGaa                                                                                           >  1:820603/1‑149 (MQ=255)
                                                               gTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCaa                                                                                    >  1:607835/1‑149 (MQ=255)
                                                                ttAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAAc                                                                                   >  2:501285/1‑149 (MQ=255)
                                                                      aCTGGCTAATAGTATTGAGCTGTTAGATAAGCACTCTCTCACTCCAGGCAGAGCCACCGACTGAGGGCTGGAAAGTAAAAAACCGACGCACAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCaaaa                                                                             >  2:692224/1‑149 (MQ=37)
                                                                      aCTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACATCCTTCCTAAGTAATAGCCAACTCaaaa                                                                             >  2:218478/1‑149 (MQ=25)
                                                                          gCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTca                                                                         <  1:754076/149‑1 (MQ=255)
                                                                             aaTAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCacac                                                                      <  1:218478/149‑1 (MQ=255)
                                                                              aTAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAAt                                                                                              >  2:790503/1‑124 (MQ=255)
                                                                              aTAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAAt                                                                                              <  1:790503/124‑1 (MQ=255)
                                                                                    ttGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTAc                                                               <  1:483788/149‑1 (MQ=255)
                                                                                        gCTGGTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTc                                                           <  1:842836/149‑1 (MQ=255)
                                                                                           gctAGATAAGAACTCTCGCACTCCAGCCCGAGCAACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTGTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCctc                                                        <  1:8387/147‑1 (MQ=255)
                                                                                            ttAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCctct                                                       <  1:616847/149‑1 (MQ=255)
                                                                                              aGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCACAATCCCCACATATTACCTTCCTCTGc                                                     >  2:564896/1‑149 (MQ=255)
                                                                                              aGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGAGTCAGACCTCCTTTCAAATGAATCGCCCACTCAACATTCACACCTATTACCTTCCTCTGc                                                     >  2:765745/1‑149 (MQ=255)
                                                                                               gATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCCCCCCTATTCCCTTCctcttcc                                                    >  2:286065/1‑146 (MQ=255)
                                                                                                    gAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTAc                                                                                                                        <  1:737330/76‑1 (MQ=255)
                                                                                                    gAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTAc                                                                                                                        >  2:737330/1‑76 (MQ=255)
                                                                                                    gAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCCACTCAAAATTCACACCTATTACCTTCCTCTGCACttgc                                               >  2:269379/1‑147 (MQ=255)
                                                                                                       ctctctCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTAcaca                                            >  1:529461/1‑149 (MQ=255)
                                                                                                       ctctctCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTAcaca                                            >  2:518968/1‑149 (MQ=255)
                                                                                                        tctctcACTCCAGCCAGAGCCACCAACTCAGGGCTGGACAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACAt                                           >  1:33567/1‑149 (MQ=255)
                                                                                                            tcACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGt                                       >  1:53153/1‑149 (MQ=255)
                                                                                                              aCTCCAGCCACAGGCACCACCTCAGCGCTGGAAAGTAAAAAACCGTCGCAAAGTCGGTTTTTTCACGTCCTGATTCAGACCTCCTTTCAAATTAACAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACAGTAGTTa                                     <  2:68316/149‑1 (MQ=37)
                                                                                                               cTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCCCACCTATTACCTTCCTCTTCACTTACACATTCGTTaa                                    >  1:88341/1‑149 (MQ=255)
                                                                                                                tCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAg                                   >  2:290686/1‑149 (MQ=255)
                                                                                                                            caccaACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGttt                       <  1:275493/149‑1 (MQ=255)
                                                                                                                             accaACGCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGtttt                      <  1:387123/149‑1 (MQ=255)
                                                                                                                                aaCTCAGGCCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGa                   <  1:658844/149‑1 (MQ=255)
                                                                                                                                 aCTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCa                                                    <  2:534123/115‑1 (MQ=255)
                                                                                                                                 aCTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCa                                                    >  1:534123/1‑115 (MQ=255)
                                                                                                                                     aGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCaaa                                                                                               >  2:68075/1‑68 (MQ=255)
                                                                                                                                     aGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCaaa                                                                                               <  1:68075/68‑1 (MQ=255)
                                                                                                                                       ggCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGACTTATcc            >  1:88269/1‑149 (MQ=255)
                                                                                                                                             aaaGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGc                                                                                       <  2:177547/68‑1 (MQ=255)
                                                                                                                                             aaaGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGc                                                                                       >  1:177547/1‑68 (MQ=255)
                                                                                                                                                 tAAAAAACCGACGCAAAGTCGGTTTGTTTACGTCCTGATTCAGACCTCCTTTCAAACGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGACTTATCCGCTTCGAaga  >  1:788847/1‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
GTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGACTTATCCGCTTCGAAGA  >  NC_000913_3_hsa_tpiA/3648202‑3648495

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.