New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 354854938 (0.770)9 (0.220)
+TTTTTTTTTAATGATACGGCGAC
8/236 4.2 22.5% coding (1522/2085 nt) malQ 4‑alpha‑glucanotransferase (amylomaltase)
?NC_000913_3_hsa_tpiA 3548573 = 36 (0.730)coding (1498/2085 nt) malQ 4‑alpha‑glucanotransferase (amylomaltase)
Rejected: Coverage evenness skew score above cutoff.

GGTCATGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATACGGTATCCACCACAAACGCAGCATCGACAT  >  NC_000913_3_hsa_tpiA/3548426‑3548720
                                                                                                                                                       |                                                                                                                                                       
ggTGATGTGTCGCCGCCACCGCCATCGACTGCTCCGGATACGCTTTCGGGGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACcggtacgg‑‑‑‑t‑‑‑‑a                                                                                                                                                    <  2:82152/149‑1 (MQ=255)
    aTGTGTCGCCGCCACCGCCATCGACTGCTGCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCga                                                                                                                                                <  2:323048/149‑1 (MQ=255)
    aTGTATCGCCCCAACCGCCATCGACTGCTCCGGATACCGTTGGGGTGCCCGGAACGTCTTCTCGTGGTCGTTTTCGAAACAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCga                                                                                                                                                <  2:750196/149‑1 (MQ=255)
         tCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAACTACAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACCATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGACCt                                                                                                                                           >  2:161557/1‑149 (MQ=255)
         tCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCt                                                                                                                                           >  1:590980/1‑149 (MQ=255)
             cgcAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCAc                                                                                                                                       <  1:366394/149‑1 (MQ=255)
                   cGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCaacta                                                                                                                                 >  1:621792/1‑146 (MQ=255)
                      cATCGAGTGTGCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACTCCCCGCTGCTGCGCAGCTTTTTTTTTTTCTCGACCCGGCGGC‑‑‑‑T‑‑‑‑ACCGAGATCTACACCAATCACCa                                                                                                                              <  2:434535/149‑1 (MQ=255)
                      cATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGAGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACAAAATGATCAGACCCACCTTACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATccccc                                                                                                                              >  1:639063/1‑148 (MQ=255)
                                tCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATg                                                                                                                    <  1:27873/149‑1 (MQ=255)
                                  cGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTCCTGCGCAGCTTACCGACAATCTCTACCGCTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGAc                                                                                                                  >  2:793721/1‑149 (MQ=255)
                                    gATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGt                                                                                                                <  1:339310/149‑1 (MQ=255)
                                           tttCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACAGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTAGGG‑‑‑‑T‑‑‑‑ACCGAGATCTTTAGCAATCACCATACTGCGATGACGTTTAGttt                                                                                                         >  2:776830/1‑149 (MQ=255)
                                            ttCGGTGCAGGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTTTTTTTTTTCATGATACGGCGGC‑‑‑‑C‑‑‑‑ACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTc                                                                                                        <  2:825658/149‑1 (MQ=255)
                                                       gAACGTCTTCTCTTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACTGCTGCTGCGCAGCTT‑‑‑‑TTTTTTTTTAATGATACGGCGACC‑‑‑‑ACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGaa                                                                                             <  2:174396/149‑1 (MQ=255)
                                                           gTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACATCGATGACGTTTACTTTCGAGTGCCAGAATCga                                                                                         <  1:405599/149‑1 (MQ=255)
                                                            tcttctCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACAGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑AACGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAATGCGAGGATCgag                                                                                        >  1:449283/1‑149 (MQ=255)
                                                            tcttcgCGTGTGCGTTTTCGAGATAGAGCATTTTGTAAGAGTACACACCGCTGCTGCGCAGTTT‑‑‑‑TTTTTTTTTAATGATACGGCGACC‑‑‑‑ACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCgag                                                                                        <  2:852402/149‑1 (MQ=255)
                                                              ttctCGTGCTCCTTCTCGAAATAGAGAACTTTCTAAGAGTACACACCCCTGCTTCGCAGCTT‑‑‑‑TTTTTTTTTAATGATACGG‑‑‑‑CGACCACCGAGATCTACACCAATCACCATAAAGCGATGACGTTTACTTTCGAGTGCCAGAATCGagag                                                                                      <  2:279329/149‑1 (MQ=255)
                                                                  cGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGa                                                                                  <  2:590980/149‑1 (MQ=255)
                                                                       tCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGatcatc                                                                             <  1:660047/149‑1 (MQ=255)
                                                                                aaaTAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGCGTGCCAGAATCGCGAGCACATCATCCCCCGGCTa                                                                    >  1:245137/1‑149 (MQ=255)
                                                                                aaaTAGAGCACCTTGTAAGAGTACACACCGCTGCTGCGCAGCTTTCTGTTATTAATGACCGGTACGG‑‑‑‑C‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATa                                                                    <  2:496244/149‑1 (MQ=255)
                                                                                          cTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATAc                                                          >  1:191912/1‑149 (MQ=255)
                                                                                               tAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATTCGCGcc                                                     <  2:191912/149‑1 (MQ=255)
                                                                                                    gTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGAt                                                <  1:776830/149‑1 (MQ=255)
                                                                                                          acCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCg                                          >  1:90224/1‑149 (MQ=255)
                                                                                                          acCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCg                                          >  1:621250/1‑149 (MQ=255)
                                                                                                                 ctgcGCAGCTCACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGcc                                                                                                 >  2:86878/1‑87 (MQ=255)
                                                                                                                 ctgcGCAGCTCACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGcc                                                                                                 <  1:86878/87‑1 (MQ=255)
                                                                                                                       aGCTTACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCCCCCTGATCTGCCGCCCCCCCATACgg                             >  2:224628/1‑149 (MQ=255)
                                                                                                                                  aaTCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATACGGTATCCACcaca                  >  1:342403/1‑149 (MQ=255)
                                                                                                                                  aaTCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCCGATCTGCCGTCTCGCCATACGGTATCCACcaca                  >  1:27470/1‑149 (MQ=255)
                                                                                                                                    tctcTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATACGGTATCCACCACaaa                >  1:783285/1‑149 (MQ=255)
                                                                                                                                    tctcTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATACGGTATCCACCACaaa                >  1:542243/1‑149 (MQ=255)
                                                                                                                                       ctACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATACGGTATCCACCACAAACgc             <  1:498153/149‑1 (MQ=255)
                                                                                                                                        tACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCtcgt                                                <  2:228113/113‑4 (MQ=255)
                                                                                                                                        tACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGAt                                                >  1:228113/1‑113 (MQ=255)
                                                                                                                                        tACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTAACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATACGGTATCCACCACAAACgca            <  2:342403/149‑1 (MQ=255)
                                                                                                                                               acgg‑‑‑‑t‑‑‑‑acCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATACGGTATCCACCACAAACGCAGCATCGa     <  1:224628/149‑1 (MQ=255)
                                                                                                                                                  g‑‑‑‑t‑‑‑‑acCGATATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATACGGTATCCACCACAAACGCAGCATCGACAt  <  2:614239/149‑1 (MQ=255)
                                                                                                                                                       |                                                                                                                                                       
GGTCATGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGG‑‑‑‑T‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATACGGTATCCACCACAAACGCAGCATCGACAT  >  NC_000913_3_hsa_tpiA/3548426‑3548720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.