New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 707934NA (NA)5 (0.130) 5/270 4.9 12.2% noncoding (165/165 nt) RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
?NC_000913_3_hsa_tpiA 3216675 = 36 (0.900)noncoding (75/78 nt) REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACAAAACATAATTAAATAAAATGTAA  >  NC_000913_3_hsa_tpiA/707787‑708066
                                                                                                                                                   |                                                                                                                                    
tttACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGcc                                                                                                                                     <  2:274366/149‑2 (MQ=25)
       cGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACa                                                                                                                              <  2:190205/149‑1 (MQ=255)
          ctCCGGCAAGGAACAGACAAACAATTTCAACCTCTAAAATGCCTCATTCGATCCCGTCATCAGGCTTACCCGATCCCTGCAAAATATTGATCATGAGTGCATTTATATCCCTGACCAGACATTCCCGCCCCATCCGCCAAGACACAGCa                                                                                                                           >  2:158084/2‑149 (MQ=255)
                    gAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCaa                                                                                                                 >  1:358602/1‑149 (MQ=255)
                            aaaCAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAAcgccgc                                                                                                         <  2:608531/149‑1 (MQ=255)
                            aaaCAGTTTCAAACGCTAAATTGCCGGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCGGCATCCAGCAACAAAAAGCAAACAGTCCACAGcgccgc                                                                                                         >  1:652261/1‑149 (MQ=18)
                                  tttCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCCAGAAACAGCAACCAATCCAAAACGCCGCGTTCAg                                                                                                   >  2:376505/1‑149 (MQ=255)
                                      aaaCGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAgcggc                                                                                               >  2:259453/1‑149 (MQ=255)
                                      aaaCGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAgcggc                                                                                               >  1:572435/1‑149 (MQ=255)
                                      aaaCGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAgcggc                                                                                               <  2:403326/149‑1 (MQ=255)
                                      aaaCGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGATCAgcggc                                                                                               >  2:281900/1‑149 (MQ=255)
                                          gCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTGACACCGCATCCGGCAAGAAACAGCATAACATCAAAAATGCCGCGTTCAGcgtcgtgt                                                                                           >  2:149187/1‑147 (MQ=18)
                                                ttGCCTGATGCGCTACGCTTATCAGGCCTACATTATCTCTGCAATATATGGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTg                                                                                     <  1:659288/149‑1 (MQ=255)
                                                   ccTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCtt                                                                                  >  2:479740/1‑149 (MQ=255)
                                                           gcTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTcgc                                                                          >  1:245811/1‑149 (MQ=255)
                                                            cTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTcgcg                                                                         >  1:337000/1‑149 (MQ=255)
                                                              aCGCTTACCCGCCCCACATGATCTCTGCAATATATTGAGTTAGCGGGTCTGGAGAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGaa                                                                       <  1:416915/149‑1 (MQ=25)
                                                               cGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGACACAGCTTTCCTGTCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGaat                                                                      >  1:563097/1‑149 (MQ=25)
                                                                         gCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCt                                                            <  1:615836/149‑1 (MQ=255)
                                                                          ccTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCtt                                                           >  1:568279/1‑149 (MQ=255)
                                                                           cTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTc                                                          <  1:499326/149‑1 (MQ=255)
                                                                               aTGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAGCGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCaa                                                      >  1:147157/1‑149 (MQ=255)
                                                                                tGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAAt                                                     <  2:230595/149‑1 (MQ=255)
                                                                                       tGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCa                                              <  2:213822/149‑1 (MQ=255)
                                                                                        gCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCat                                             >  1:382373/1‑149 (MQ=255)
                                                                                        gCAATATATGGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCat                                             <  1:9739/149‑1 (MQ=255)
                                                                                                ttGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCataaaataaa                                     >  1:32601/1‑149 (MQ=255)
                                                                                                ataaatttGCCTGCTATTGTAGGCCGAACAAGCCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTCCTGCTTTTCTTCGCGAATTAATTCCGCCTCGCAATTTATCCataaaataaa                                     <  2:135387/144‑1 (MQ=255)
                                                                                                        gCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAAt                             >  2:199107/1‑149 (MQ=255)
                                                                                                        gCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAAt                             >  1:334523/1‑149 (MQ=255)
                                                                                                         cGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAg                                                                                                                             <  2:410172/52‑1 (MQ=255)
                                                                                                         cGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAg                                                                                                                             >  1:410172/1‑52 (MQ=255)
                                                                                                              ttttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACGTAAAAACAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACaac                       >  1:642854/1‑148 (MQ=255)
                                                                                                              ttttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACaaa                       >  2:610804/1‑149 (MQ=255)
                                                                                                                     ggCCGGATAAGGCGTTCACGCTGCATCCGGCAAGAAACCGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACAAAACATact                >  2:633485/1‑147 (MQ=255)
                                                                                                                        cGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACAAAACATAATtaa             >  1:518545/1‑149 (MQ=255)
                                                                                                                          gATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACAAAACATAATtaaat           >  2:559930/1‑149 (MQ=255)
                                                                                                                                   tgcACGCCTCATCCCACAAAAAACAGCAAACAATCCAAAACGCCGCGTTCATCGGCGTTTTTTCTGCTTTTCTTCGCTAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACAAAACATAATTAAATAAAATGTaa  <  1:149187/147‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                    
TTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACAAAACATAATTAAATAAAATGTAA  >  NC_000913_3_hsa_tpiA/707787‑708066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.