New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA 2808182 =48 (1.210)6 (0.160) 6/272 4.2 11.7% noncoding (52/84 nt) REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913_3_hsa_tpiA 2808208 = 44 (1.140)noncoding (78/84 nt) REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGGATCAAAGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGCTTAGCCCGGCGCTGATCGT  >  NC_000913_3_hsa_tpiA/2808059‑2808356
                                                                                                                                                     |                                                                                                                                                    
tgcaTCAAAGCCCACCAGCAGCAGTGCGATGGCTGGGCGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATCCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCAt                                                                                                                                                      <  1:211111/147‑1 (MQ=255)
   aTCAAAGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGcc                                                                                                                                                   >  1:302864/1‑150 (MQ=255)
       aaGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGACTACa                                                                                                                                               >  2:203662/1‑150 (MQ=255)
           ccaccaGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAAcc                                                                                                                                           >  2:396679/1‑150 (MQ=255)
                  cagcagTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGc                                                                                                                                    >  1:526407/1‑150 (MQ=255)
                            aTGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaac                                                                                                                          <  2:302864/150‑1 (MQ=255)
                                 tGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatct                                                                                                                     >  1:154043/1‑150 (MQ=255)
                                    gTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTTCAAACCCCATCGCACATTTCAACAatctatc                                                                                                                  >  2:486541/1‑150 (MQ=255)
                                    gTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCCACActctatc                                                                                                                  >  2:188700/1‑150 (MQ=255)
                                     tGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCTCCTTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctatct                                                                                                                 <  1:514363/150‑1 (MQ=255)
                                     tGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctatct                                                                                                                 >  2:285681/1‑150 (MQ=255)
                                         tGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCa                                                                                                             >  1:12327/1‑150 (MQ=255)
                                         tGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCa                                                                                                             >  1:653969/1‑150 (MQ=255)
                                         gtgggCGCTGGCAGCGCAGAAGTAATTTTTATTCCGTCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGAGGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCa                                                                                                             <  2:593220/147‑1 (MQ=255)
                                          gAGGCGCTGGCAGCGCAGAATTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCAt                                                                                                            <  1:157874/150‑1 (MQ=255)
                                               gcTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCat                                                                                                       <  2:181074/150‑1 (MQ=255)
                                                     aGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATtcat                                                                                                 <  1:75652/150‑1 (MQ=255)
                                                         cAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAAc                                                                                             <  1:396679/150‑1 (MQ=255)
                                                                  tttttATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCtat                                                                                    <  2:582757/150‑1 (MQ=255)
                                                                    tttATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCtatta                                                                                  >  2:483632/1‑150 (MQ=255)
                                                                    tttATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTAATCCCATATTCATCAACATCCGCtatta                                                                                  <  2:573862/150‑1 (MQ=255)
                                                                            ggCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTc                                                                          <  1:675610/150‑1 (MQ=255)
                                                                                 aTAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCt                                                                     >  2:688646/1‑150 (MQ=255)
                                                                                      gCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTActc                                                                >  2:218520/1‑150 (MQ=255)
                                                                                      gCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAatc                                                                >  1:12229/1‑150 (MQ=255)
                                                                                        gTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATGTCCAGCTTAatcat                                                              >  1:228416/1‑150 (MQ=255)
                                                                                                cGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCtgat                                                      <  1:385126/150‑1 (MQ=255)
                                                                                                   aTCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTAGCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGaa                                                   >  1:623885/1‑150 (MQ=255)
                                                                                                      cgccgTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGATTAATCATCACCTGATGAACaa                                                >  2:37966/1‑150 (MQ=255)
                                                                                                          gTTCTGTGCACAATGCCTGATGCGGCGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCCCATTTCAACAATCTAACGTTCATCCCATATTCATCAACATCCGCCATGATTGATTTCCCACTTATTCACTACCTGCTGAACAAAaat                                            >  2:131708/1‑150 (MQ=37)
                                                                                                             cTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAaataat                                         <  2:653969/150‑1 (MQ=255)
                                                                                                                tgCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctat                                                                                                                   >  2:146653/1‑73 (MQ=255)
                                                                                                                tgCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctat                                                                                                                   <  1:146653/73‑1 (MQ=255)
                                                                                                                tgCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCCTCACCTGATGAACAAAAATAATGAc                                      >  2:226284/1‑150 (MQ=255)
                                                                                                                    caATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCAt                                                                                                            <  1:517886/76‑1 (MQ=255)
                                                                                                                    caATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCAt                                                                                                            >  2:517886/1‑76 (MQ=255)
                                                                                                                     aaTGCCTCATGCGACGCGGGCGCGACTGATCATGCCCACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAAc                                 <  1:501781/150‑1 (MQ=255)
                                                                                                                                 gACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGc                     <  2:12327/150‑1 (MQ=255)
                                                                                                                                  ccGCTGGCGCGTCTTATCATGCCTACAAACCACCTCGCACATTTCAACAAGCTATCTTTCATCCCCTCATGACGAGCACCCGAATATGCTGGTCGCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGCt                    <  1:688646/149‑1 (MQ=255)
                                                                                                                                  aCGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGCt                    >  1:69395/1‑150 (MQ=255)
                                                                                                                                      tGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTaa                                   >  2:427088/1‑131 (MQ=255)
                                                                                                                                      tGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTaa                                   <  1:427088/131‑1 (MQ=255)
                                                                                                                                        gcgcGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGCTTAGccc              >  2:665109/1‑150 (MQ=255)
                                                                                                                                        gcgcGTCTTATCATACCGACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATAAGCTTAGccc              >  2:259413/1‑150 (MQ=255)
                                                                                                                                                    aTGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGCTTAGCCCGGCGCTGATCGt  >  1:406439/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
TGGATCAAAGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGCTTAGCCCGGCGCTGATCGT  >  NC_000913_3_hsa_tpiA/2808059‑2808356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.