New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 540528	16 (0.650)	4 (0.170)	4/268	2.8	21.0%	intergenic (+20/‑37)	allB/ybbY	allantoinase/putative uracil/xanthine transporter
	?	NC_000913_3_hsa_tpiA	= 540537	15 (0.650)					intergenic (+29/‑28)	allB/ybbY	allantoinase/putative uracil/xanthine transporter

CCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAG  >  NC_000913_3_hsa_tpiA/540380‑540675                                                                                                                                                     |                                                                                                                                                    ccGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCACCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCATCCCTGTTGCGCCGAAAGGTCAATTCATCCTTAAACATCAGCAGTGATCTGGCCCCTGCAATGCGCG                                                                                                                                                     >  1:98861‑M1/1‑149 (MQ=255) ccGTATGTTGACAGAACCATTGGCGCGCGTATCACGAAAACCATCTGACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCG                                                                                                                                                     <  2:39165‑M1/149‑1 (MQ=255)         tGGCCGTACTATTTGCGCGCGTATCACTAAAACCATTTTTCTTTGTGATGTGATTTACGACATTGAACATGGCTTCTCTGTTACGTCAATGGGCCATCTTAGCCCTAAACATCCGCAGACACCTTGCCCCTGCACTGCCCTTCTTTgcg                                                                                                                                             <  2:403567/149‑1 (MQ=255)            ccGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGTGGcg                                                                                                                                          <  2:90567‑M2/149‑3 (MQ=255)                             gTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAg                                                                                                                         <  1:195783/149‑1 (MQ=255)                                   cGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGgtgtgt                                                                                                                   <  1:156977/149‑1 (MQ=255)                                               tACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGAAGAAAGGTCCATTTATCAATATACATCAACAGGTGTCTTGCCCCTGCAATTCCCGTCCTTGCGGCGGGCATTCTACGGTTAAGGTGTGTTTATGTTCAAtt                                                                                                       <  1:86237/149‑1 (MQ=255)                                                    ggtgATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCa                                                                                                  <  1:94978/149‑1 (MQ=255)                                                      tgatgtgatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGt                                                                                                >  1:262160/1‑149 (MQ=255)                                                                 aCGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCCATTTATCCTTAAACATCAGCAGTACTCTGGCCCCTGCAATGCCTGGGCGTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGaaa                                                                                     <  1:209642/149‑1 (MQ=255)                                                                    aCATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCa                                                                                                  <  1:234555/133‑1 (MQ=255)                                                                    aCATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCa                                                                                                  >  2:234555/1‑133 (MQ=255)                                                                      aTTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGccgcaaggacgggcattgca                                                                                                                                 <  1:358377‑M1/100‑21 (MQ=255)                                                                      aTTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGccgcaaggacgggcattgca                                                                                                                                 >  2:358377‑M1/1‑80 (MQ=255)                                                                       ttGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGccgcaaggacgggcattgcaggg                                                                                                                              >  2:216600‑M1/1‑79 (MQ=255)                                                                       ttGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGccgcaaggacgggcattgcaggg                                                                                                                              <  1:216600‑M1/102‑24 (MQ=255)                                                                                  ttCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAAAGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGAttt                                                                    >  1:422112/1‑149 (MQ=255)                                                                                         ttGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTCCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGt                                                             >  2:317416/1‑149 (MQ=255)                                                                                              ccGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTACCTTTTGCAGTAGGCCGCGAAAGACTGTTATAGCGATTTAAGTTGttttta                                                        >  2:119414/1‑148 (MQ=255)                                                                                                     gTCAATTTATACTTAAACATCAGGAGTAAGCTGGCCCCTGCCATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTAttt                                                 <  2:126930/149‑1 (MQ=255)                                                                                                                       aTCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTgg                               >  2:104192/1‑149 (MQ=255)                                                                                                                                  tCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACg                    >  1:66968/1‑149 (MQ=255)                                                                                                                                        cccTGCAATGCCCGTCCTTGCGGcgggcattgcaggggccagattactgctgatgtttaaggataaattgacctttcggcgcaacagggaagccctgttcaa                                                             >  2:216600‑M2/1‑23 (MQ=255)                                                                                                                                        cccTGCAATGCCCGTCCTTGCGGcgggcattgcaggggccagattactgctgatgtttaaggataaattgacctttcggcgcaacagggaagccctgttcaa                                                             <  1:216600‑M2/102‑80 (MQ=255)                                                                                                                                           tGCAATGCCCGTCCTTGCGGcgggcattgcaggggccagattactgctgatgtttaaggataaattgacctttcggcgcaacagggaagccctgttcaat                                                            >  2:358377‑M2/1‑20 (MQ=255)                                                                                                                                           tGCAATGCCCGTCCTTGCGGcgggcattgcaggggccagattactgctgatgtttaaggataaattgacctttcggcgcaacagggaagccctgttcaat                                                            <  1:358377‑M2/100‑81 (MQ=255)                                                                                                                                                  cccGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTc    >  2:267673/1‑149 (MQ=255)                                                                                                                                                    cgccacaaggacgggcattgcaggggccagattactgctgatgtttaaggataaattgacctttcggcgcaacagggaagccctgttcaatgtcgtaaatcacatcaccacgtaagatggttttcgtgatacgcgcgccaatggtacgg  <  2:90567‑M1/149‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAG  >  NC_000913_3_hsa_tpiA/540380‑540675

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.