New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA 1552279 =NA (NA)3 (0.130) 3/260 3.1 NA noncoding (31/97 nt) RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913_3_hsa_tpiA 4080020 = NA (NA)noncoding (1/98 nt) REP297 (repetitive extragenic palindromic) element; contains 2 REP sequences REP297 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

ATCAATCGCAAACAGCAAGAACCAGTGTTCCTGGCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGG  >  NC_000913_3_hsa_tpiA/4079872‑4080168
                                                                                                                                                    |                                                                                                                                                    
atcaatcGCAAACAGCAAGAACCAGTGTTCCTGGCATCTGGCAAGGGTGTGAGGAAGATGATGTCGAATATCAGCGAAAGATGCGCGAGGAATAGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTCGTTCATg                                                                                                                                                      >  2:370512/1‑149 (MQ=255)
 tcaatcGCAAACAGCAAGAACCAGTGTTCCTGGCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGc                                                                                                                                                     >  2:267827/1‑149 (MQ=255)
  caatcGCAAACAGCAAGAACCAGTGTTCCTGGTATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGcc                                                                                                                                                    <  1:427132/149‑1 (MQ=255)
  aaatcGAAAACAGCAAGAACGAGTGTTCCTGGGATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCTCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGcc                                                                                                                                                    <  2:12870/148‑1 (MQ=255)
   aatcGCAAACAGCAAGAACCAGTGTTCCTGGCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCg                                                                                                                                                   >  2:203811/1‑149 (MQ=255)
   aatcGCAAACAGCAAGAACCAGTGTTCCTGGCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGATAAGCTAGAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCg                                                                                                                                                   >  1:120936/1‑149 (MQ=39)
     tcGCAAACAGCAAGAACCAGTGTTCCTGGCATCTGGCAAGGGGGTGAGGAAGATGGTGTCGAATAACAGCGTAAGCTGCGCGAGGAATGGAAAAGGGAAAAAATGATGTCAATCAGATTGCTGACCACGTGCGCGGTCTTCATGCCGGa                                                                                                                                                 >  2:178564/1‑149 (MQ=255)
      cGCAAACAGCAAGAACCAGTGTTCCCGGCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCTAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGAt                                                                                                                                                <  1:6437/149‑1 (MQ=255)
           aCAGCAAGAACCAGTGTTCCTGGCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATgcggc                                                                                                                                           <  1:407302/149‑1 (MQ=255)
            cAGCAAGAACCAGTGTTCCTGGCTTCTGGCCAGTGTGTGAGGAAGCATCTGACGCAAATCAGCGTAAGCTGCACGAGGAATGGTAATGCGAAAAAATGAGGTCAATCAGATTGCTGACAACGGGCGCGTCGTTCATGACGGATgcgccg                                                                                                                                          >  2:109994/1‑149 (MQ=255)
             aGCAAGAACCAGTGTTCCTGGCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGt                                                                                                                                         <  2:221700/149‑1 (MQ=255)
               cAAGAACCAGTGTTCCTGGCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGa                                                                                                                                       >  1:61593/1‑149 (MQ=255)
                  gAACCAGTGTTCCTGGCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACg                                                                                                                                    >  2:409058/1‑149 (MQ=255)
                  gAACCAGTGTTCCTGGCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACg                                                                                                                                    >  2:374461/1‑149 (MQ=255)
                  gAACCAGTGTTCCTGGCATCGGGCAAGGGTGGGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCACGCCGCATCCGGCATGAAca                                                                                                                                    <  1:39133/149‑2 (MQ=255)
                         tgtTCCTGGCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATc                                                                                                                             >  2:169041/1‑149 (MQ=255)
                             cgtGGCATCTGGCAAGGGGGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTGATGCCGGATGCGGCGTGAACGCCTTATCCGGc                                                                                                                         <  2:124483/147‑1 (MQ=255)
                             ccTGGCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGc                                                                                                                         <  1:13612/149‑1 (MQ=255)
                                ggCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATAGCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa                                                                                                                      <  2:112497/149‑1 (MQ=255)
                                   aTCTGGCAAGGGAGTGAGGAAAATGATGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTCTTCATTCCGTATGCTGCGTGAACGCCTGATCCAGCCTACaa                                                                                                                   >  2:15308/1‑149 (MQ=37)
                                        gCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCg                                                                                                              <  1:185049/149‑1 (MQ=255)
                                         cAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGt                                                                                                             >  2:154372/1‑149 (MQ=255)
                                          aaGGGTGTGAGGAAGATGGTTTCGTACATCAGCGTCAGCTGCGCGAGTTATGGTAACGTGAAAACATGATGTCAGTAAAGCTGGTTATGGCGGGGGCGTTGTTCATGCCGGCATTGGCGTGAACGCCTTATCCGGCCTACAAAGTCGta                                                                                                            <  2:391414/149‑1 (MQ=16)
                                          aaGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGta                                                                                                            >  2:169963/1‑149 (MQ=255)
                                           aGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGtat                                                                                                           <  1:314676/149‑1 (MQ=255)
                                             ggTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATaa                                                                                                         >  2:9511/1‑149 (MQ=255)
                                              gtggGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGTGAGGAATGGTAATGGGAAAAAATGATGTCAACCAGATTGCTGACAACGGGCGCGTTGTTCCTGCCGGATGCGGCGTGAGCGCCTTGTCCGGCCTACTAAGGCGTATaaa                                                                                                        <  2:254981/149‑1 (MQ=255)
                                                   aGGAAGATGGTGTCGAATATCAGCGTAAGCCGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCaa                                                                                                   <  1:144770/149‑1 (MQ=255)
                                                   aGGAAGATGGTATCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCaa                                                                                                   <  2:402551/149‑1 (MQ=255)
                                                    ggAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAAt                                                                                                  <  1:115622/149‑1 (MQ=255)
                                                     gAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATg                                                                                                 >  2:259914/1‑149 (MQ=255)
                                                          tGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGaa                                                                                                                                      <  2:63475/107‑1 (MQ=255)
                                                          tGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGaa                                                                                                                                      >  1:63475/1‑107 (MQ=255)
                                                             tgtCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAg                                                                                         >  1:11413/1‑149 (MQ=255)
                                                               tCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGtt                                                                                       >  1:300526/1‑149 (MQ=255)
                                                               tCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGtt                                                                                       >  2:33889/1‑149 (MQ=255)
                                                                 gAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTa                                                                                     >  2:159318/1‑149 (MQ=255)
                                                                  aatcgctgCGTGAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATACAAAGTCGTATAAATTCAATGTATTGCAGTTTAt                                                                                    <  2:409680/142‑1 (MQ=255)
                                                                  aaTAGCAGGGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCCGATGCGGCGTGAACCCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTAt                                                                                    <  1:378684/149‑1 (MQ=255)
                                                                        aGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCTTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAg                                                                              <  1:318831/149‑1 (MQ=255)
                                                                        aGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTTCAGTTTATTGGTAg                                                                              >  2:188060/1‑149 (MQ=255)
                                                                                  ggccgAGGAATGGTCATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAag                                                                    <  1:227321/146‑1 (MQ=255)
                                                                                    gcgAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAagcg                                                                  >  1:397133/1‑149 (MQ=255)
                                                                                          aaTGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAagcgcagcgc                                                            >  2:259505/1‑149 (MQ=255)
                                                                                          aaTGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCAGGATTAAGCGCGAACGCCTTATCCGGCCTACAAAGTCGAATAAATTCAATGTATTCCAGTTTATTGGTAGGCCTGATAagcgtagcgc                                                            >  2:144186/1‑149 (MQ=37)
                                                                                                gaTGGGAAAAAATGATGTCAATGAGGTTGCGGACAACGGGCGGTTTGTTCATGCCGGATGCGGCGTGATCGCCTTGTCCGGCCTACACCGTCGCCTCAATTCGATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAgg                                                      <  2:393424/148‑1 (MQ=21)
                                                                                                agtGGGAAAAAATGAGGTGAATCAGATTGCTGACAACGTGGGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAgg                                                      <  2:205760/147‑1 (MQ=255)
                                                                                                  tGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCACTGTTTTGCTGGTTATTTGTAGGCCTGATAAGCGCAGCGCATCAGGcc                                                    >  1:295807/1‑148 (MQ=25)
                                                                                                    ggAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAAt                                                  >  1:323013/1‑149 (MQ=255)
                                                                                                     gAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACACAGTCGTATAAATTCACTGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATc                                                 >  1:47810/1‑149 (MQ=255)
                                                                                                     gAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATc                                                 >  1:303041/1‑149 (MQ=255)
                                                                                                             gatgTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCtt                                         <  1:42191/149‑1 (MQ=255)
                                                                                                             gatgTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCATTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCtt                                         <  2:138788/149‑1 (MQ=255)
                                                                                                                gTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGGCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGtc                                      >  2:361231/1‑149 (MQ=255)
                                                                                                                  cAATCAGATTGCTGACAACGGGCGCGTTGTTCATGCCGGCTGCGGCATGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGtcat                                    <  2:351382/149‑1 (MQ=255)
                                                                                                                   aaTCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGGTGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGtcatc                                   >  2:68551/1‑149 (MQ=255)
                                                                                                                               gACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGccc                       <  1:169963/149‑1 (MQ=255)
                                                                                                                               gACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGccc                       <  1:203811/149‑1 (MQ=255)
                                                                                                                                     gTGCGCGTTGTTCATGCCGGATGCGGCGGGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAAcc                 <  1:139193/149‑1 (MQ=255)
                                                                                                                                        cgtgtgtttCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAGAGACGTATAAATTCAATGTATAGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTa              <  1:297284/142‑1 (MQ=25)
                                                                                                                                          cgTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTAtt            <  2:268231/149‑1 (MQ=255)
                                                                                                                                               ttCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGCtgt       >  1:199366/1‑149 (MQ=255)
                                                                                                                                                 cATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATgtgg     <  1:232561/149‑1 (MQ=255)
                                                                                                                                                   tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATgtggtg   >  1:36922/1‑149 (MQ=255)
                                                                                                                                                    gCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAAt                                                                                                  <  2:55303/53‑1 (MQ=255)
                                                                                                                                                    gCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAAt                                                                                                  >  1:55303/1‑53 (MQ=255)
                                                                                                                                                    gCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCCTAACCTTATTGATgtggtgg  >  2:110608/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
ATCAATCGCAAACAGCAAGAACCAGTGTTCCTGGCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGG  >  NC_000913_3_hsa_tpiA/4079872‑4080168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.