mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 1,864,763 | 0 | A | T | 22.7% | 35.2 / 10.7 | 22 | intergenic (+29/+19) | yeaD/yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| * | NC_000913_3_hsa_tpiA | 2,304,480 | 0 | G | A | 21.4% | 38.6 / 11.5 | 28 | intergenic (+87/+628) | eco/mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| Marginal new junction evidence (lowest skew 10 of 29 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 4118801 = | 70 (2.470) | 5 (0.190) | 5/262 | 2.9 | 7.4% | intergenic (+59/+26) | zapB/rraA | FtsZ stabilizer, septal ring assembly factor, cell division stimulator/ribonuclease E (RNase E) inhibitor protein |
| ? | NC_000913_3_hsa_tpiA | 4118823 = | 60 (2.260) | intergenic (+81/+4) | zapB/rraA | FtsZ stabilizer, septal ring assembly factor, cell division stimulator/ribonuclease E (RNase E) inhibitor protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2823511 = | 50 (1.760) | 5 (0.190) | 5/266 | 3.0 | 10.3% | coding (259/1062 nt) | recA | DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| ? | NC_000913_3_hsa_tpiA | 2823549 = | 40 (1.480) | coding (221/1062 nt) | recA | DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3946053 | 0 (0.000) | 5 (0.180) | 5/272 | 3.1 | 100% | noncoding (2350/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_hsa_tpiA | = 3946069 | NA (NA) | noncoding (2366/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 228108 | NA (NA) | 6 (0.220) | 5/272 | 3.1 | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4044062 = | 33 (1.160) | 3 (0.130) | 3/228 | 3.3 | 9.4% | intergenic (+18/‑137) | dsbA/yihF | periplasmic protein disulfide isomerase I/DUF945 family protein |
| ? | NC_000913_3_hsa_tpiA | 4044088 = | 31 (1.340) | intergenic (+44/‑111) | dsbA/yihF | periplasmic protein disulfide isomerase I/DUF945 family protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2300133 | 23 (0.810) | 4 (0.150) | 4/260 | 3.3 | 15.6% | coding (128/696 nt) | napG | ferredoxin‑type protein |
| ? | NC_000913_3_hsa_tpiA | = 2300140 | 22 (0.830) | coding (121/696 nt) | napG | ferredoxin‑type protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1552101 = | NA (NA) | 4 (0.150) | 4/256 | 3.3 | NA | noncoding (31/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_hsa_tpiA | 1552249 = | NA (NA) | noncoding (1/97 nt) | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1552071 = | NA (NA) | 4 (0.150) | 4/256 | 3.3 | NA | noncoding (1/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_hsa_tpiA | 1552101 = | NA (NA) | noncoding (31/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3180693 | 29 (1.020) | 4 (0.150) | 4/266 | 3.4 | 13.0% | coding (273/1161 nt) | ygiC | ATP‑Grasp family ATPase |
| ? | NC_000913_3_hsa_tpiA | = 3180699 | 26 (0.960) | coding (279/1161 nt) | ygiC | ATP‑Grasp family ATPase | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2842429 | 30 (1.060) | 4 (0.150) | 4/266 | 3.4 | 11.8% | noncoding (7/79 nt) | REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_hsa_tpiA | = 2842445 | 31 (1.150) | noncoding (23/79 nt) | REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||