New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	3426836 =	NA (NA)	4 (0.120)	4/270	4.3	NA	intergenic (‑53/+122)	rrlD/alaU	23S ribosomal RNA of rrnD operon/tRNA‑Ala
	?	NC_000913_3_hsa_tpiA	3426854 =	NA (NA)					intergenic (‑71/+104)	rrlD/alaU	23S ribosomal RNA of rrnD operon/tRNA‑Ala
Rejected: Coverage evenness skew score above cutoff.

TTACCGACGCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATCACTA  >  NC_000913_3_hsa_tpiA/3426700‑3426951                                                                                                                                         |                                                                                                                    ttACCGACGCTTATCGCAGATTAGCACGTCCTTAACAAACCCTGCTGGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCgt                                                                                                         <  1:471633/149‑1 (MQ=11)      gACGCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTc                                                                                                    >  1:554147/1‑149 (MQ=32)         gCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAgt                                                                                                 <  2:556370/149‑1 (MQ=32)              tCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCgttgtt                                                                                                     <  2:436266/140‑1 (MQ=33)              tCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCgttgtt                                                                                                     >  1:436266/1‑140 (MQ=33)              tCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTc                                                                                            <  1:489757/149‑1 (MQ=32)                 cAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTAACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTCTCatt                                                                                         >  2:122965/1‑147 (MQ=12)                         cACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCt                                                                                 >  1:512834/1‑149 (MQ=32)                                tgcATCGCTTCTGTTTTCCAGGTCGTCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGGAGATGTTTCACTTCAGAGTTGCGAAAGTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCa                                                                          >  2:385233/3‑149 (MQ=11)                                           tGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAag                                                               >  1:479298/1‑149 (MQ=32)                                               tGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTAACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGCTTTTTAAAGGGCa                                                           >  2:305595/1‑149 (MQ=12)                                                  ctgggCATCGACCTTGTACGCGTAGTCGCCTGACCTCACAATCCGAAGATGTTTCACTTCAGAGTCGCGCAAATCTGAGAGACTCACGAACAACTTTCCTTGTTCAGTGTTTCAATTTTCAGGTTGAGCCAGACTCTTAAAGAGCaaaa                                                        <  1:496234/147‑1 (MQ=11)                                                    gggCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACt                                                      >  2:9025/1‑149 (MQ=35)                                                        aTCCACCGTGTCCGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGACAGACTCACGAACCCCTAGCGGCGACTAGTGTTTCAATTTTCAGCTTGATCAAGATTTTTAAAGAGCAAAACTTCGc                                                  >  1:293108/1‑149 (MQ=11)                                                           cACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGt                                               >  1:43385/1‑149 (MQ=40)                                                             ccGTGTACGCTTAGTCGCTTAACCTCAGAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCGAAACTTCGCAGTGa                                             >  2:595727/1‑149 (MQ=255)                                                                       tttgTCGCTGAACCTCTCATCGCGAAGGTGGTACACTTCATAGTTGCGAAAGTTTGTGAGACTCACGAACCAATTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGCTCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAg                                   <  2:9990/146‑1 (MQ=14)                                                                        tAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCACTTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAgg                                  >  1:592471/1‑149 (MQ=255)                                                                               ttAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACActc                           >  2:543189/1‑149 (MQ=255)                                                                               ttAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACActc                           >  1:232656/1‑149 (MQ=255)                                                                                 aaCCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTg                         >  1:602874/1‑149 (MQ=255)                                                                                 aaCCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGAGGTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTg                         <  2:554147/149‑1 (MQ=255)                                                                                   ccTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGaa                       >  1:14304/1‑149 (MQ=255)                                                                                    cTCACAACCGGAGGATGTGTGACTTCAGAGTTGCGAGAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAg                      >  2:598742/1‑149 (MQ=14)                                                                                        caACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTAtt                  >  1:603773/1‑149 (MQ=255)                                                                                         aaCCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGGACCCTCTGCAGTAttt                 >  2:304447/1‑149 (MQ=255)                                                                                            ccGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTAtttttt              >  2:160752/1‑149 (MQ=255)                                                                                                    gTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATc      >  2:202469/1‑149 (MQ=40)                                                                                                        cACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAACCTCCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATCACTa  <  1:325693/149‑1 (MQ=255)                                                                                                                                         |                                                                                                                    TTACCGACGCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATCACTA  >  NC_000913_3_hsa_tpiA/3426700‑3426951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.