New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	4245080 =	NA (NA)	6 (0.150)	6/266	4.6	NA	noncoding (7/126 nt)	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences
	?	NC_000913_3_hsa_tpiA	4245106 =	NA (NA)					noncoding (33/126 nt)	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences
Rejected: Coverage evenness skew score above cutoff.

CGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_hsa_tpiA/4245233‑4245080 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccttatccgACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGC  >  NC_000913_3_hsa_tpiA/4245106‑4245246                                                                                                                                                                                                                                                                                                         CGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTT                                                                                                                                                    <  2:449898/149‑1   gcgctTCGTATCGCCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGGCCGGCCTATAAACCCGAAACGGATGTATGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAATGCGTGAAAGCCTTAT                                                                                                                                                  <  2:171164/144‑1   CAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTAT                                                                                                                                                  <  2:268467/149‑1    AGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATC                                                                                                                                                 >  1:134328/1‑149                                                                                                       TCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGG                                                                    <  1:493002/127‑1                                                                                                       TCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGG                                                                    >  2:493002/1‑127                                                                                                                                   GATAAGGCGTGAAAGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAGATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCGTTTCACGGCGTTACTTGGTGAGACGAGTCT                  >  1:221741/1‑149                                                                                                                                    ATAAGGCGTGAAAGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTG                 >  2:444080/1‑149                                                                                                                                             GAAAGCCTTATCCGACAACAACTGCCTGATGCGACGC                                                                                                                        <  1:89128/37‑1                                                                                                                                             GAAAGCCTTATCCGACAACAACTGCCTGATGCGACGC                                                                                                                        >  2:89128/1‑37                                                                                                                                                 GCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGG    >  2:413455/1‑149                                                                                                                                                   CTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGC  >  2:451468/1‑149                                                                                                                                                                                                                                                                                                         CGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_hsa_tpiA/4245233‑4245080 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccttatccgACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGC  >  NC_000913_3_hsa_tpiA/4245106‑4245246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.