mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 28.6% | 96.2 / 42.8 | 70 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 62 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 4543158 | 39 (1.040) | 8 (0.220) | 8/266 | 3.1 | 17.8% | coding (62/549 nt) | fimA | major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_hsa_tpiA | = 4543162 | 37 (1.040) | coding (66/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4041206 = | 78 (2.080) | 7 (0.200) | 7/260 | 3.3 | 9.0% | coding (228/528 nt) | mobB | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_hsa_tpiA | 4041232 = | 69 (1.980) | coding (202/528 nt) | mobB | molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2304842 = | NA (NA) | 9 (0.250) | 7/266 | 3.4 | 17.7% | noncoding (426/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_hsa_tpiA | 4027518 = | 44 (1.170) | noncoding (197/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2304842 = | NA (NA) | 9 (0.250) | 7/266 | 3.4 | 18.1% | noncoding (426/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_hsa_tpiA | 3042440 = | 43 (1.140) | noncoding (120/155 nt) | REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2304842 = | NA (NA) | 9 (0.250) | 7/266 | 3.4 | NA | noncoding (426/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_hsa_tpiA | = 2431012 | NA (NA) | noncoding (84/84 nt) | REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2304842 = | NA (NA) | 9 (0.250) | 7/266 | 3.4 | NA | noncoding (426/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_hsa_tpiA | = 2347327 | NA (NA) | noncoding (168/203 nt) | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2304842 = | NA (NA) | 9 (0.250) | 7/266 | 3.4 | 13.1% | noncoding (426/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_hsa_tpiA | = 2347239 | 63 (1.680) | noncoding (80/203 nt) | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2304842 = | NA (NA) | 9 (0.250) | 7/266 | 3.4 | 32.1% | noncoding (426/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_hsa_tpiA | 2304923 = | 20 (0.530) | noncoding (507/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2304616 = | NA (NA) | 9 (0.250) | 7/266 | 3.4 | 46.3% | noncoding (200/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_hsa_tpiA | 2304697 = | 11 (0.290) | noncoding (281/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2304591 = | NA (NA) | 9 (0.250) | 7/266 | 3.4 | 19.5% | noncoding (175/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_hsa_tpiA | 2304609 = | 39 (1.040) | noncoding (193/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||