New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	3426836 =	NA (NA)	5 (0.140)	4/258	NT	NA	intergenic (‑53/+122)	rrlD/alaU	23S ribosomal RNA of rrnD operon/tRNA‑Ala
	?	NC_000913_3_hsa_tpiA	3426854 =	NA (NA)					intergenic (‑71/+104)	rrlD/alaU	23S ribosomal RNA of rrnD operon/tRNA‑Ala

TATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATCACTACAGAG  >  NC_000913_3_hsa_tpiA/3426711‑3426956                                                                                                                                                |                                                                                                       tATCGCAGATTATCACGTCCTTCATCGCCTCTGACTGCCAGGGCAACCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGtt                                                                                                   <  1:399671/149‑1 (MQ=17)          ttAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCCCAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTc                                                                                          >  1:699752/1‑149 (MQ=17)                     ttCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCAGGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCa                                                                               >  1:184866/1‑149 (MQ=17)                               ctGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTTAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTaaa                                                                     <  1:582087/149‑1 (MQ=17)                                            cATCCACCGCGTGCGCCTAGTCGCCTAACCTCACCACCCGAAGATGTTCCACTTAAGAGTTGCGAAACTTTGTGAGACTCATCAAGTACTTTCGTTGTTCAGTGTTTCAATTTGCAGCTTGATCCAGATTTTTATAGAGCAAAACTTct                                                        <  2:117590/149‑2 (MQ=11)                                              tCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCa                                                      >  2:382242/1‑149 (MQ=38)                                                        aCGCTTAGTCGCTTAACCTCACAACACGAAGATGGTTAACTTCAGAGTTGCCAAAATTTGAAAGACTCGAGGAAAACGTTAGTTGTTAAGTGTTTAAATTTTCAGCTTGATCCAGGTTTCTAAAGCGCAAAACTTCGCGGTGAACCttg                                            >  2:68756/1‑148 (MQ=14)                                                        aCGATTAGTCGCTTAACCTCACAAACCGAAGATGTTTCACTTCGGAGTTGGGAAAATTGGAGAGAATCAGGAAGAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAAGTTCGAAGTGAACGttt                                            >  1:217089/1‑149 (MQ=14)                                                                tCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGGGTGGCGAAAATTTGAGAGACTCACGCACCACAATCCTGGTGCATGGGTAAAATTTTCAGCTCCATCAGGATTTTTCAAGATCAAACCTTCGCCGTGAACCTTTCCCGGTac                                    >  2:116376/1‑149 (MQ=9)                                                                tCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTac                                    >  1:144488/1‑149 (MQ=255)                                                                  gCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTacac                                  >  1:365647/1‑149 (MQ=255)                                                                         cTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAg                           >  2:689744/1‑149 (MQ=255)                                                                                  cGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTAttttttt                  >  2:656723/1‑148 (MQ=255)                                                                                  cGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTttta                  <  1:454657/149‑1 (MQ=255)                                                                                   gAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTtttat                 >  1:420562/1‑149 (MQ=255)                                                                                    aggATGTTTGATTTCAGAGTTGCGAAAATTTTGTAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCATCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTtttatt                <  2:160906/147‑1 (MQ=11)                                                                                          tttCACTTCAGAGCTGCGAAAATTGCAGAGACTCACGAAAAACTTTCCTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAGCGTTTGCAGGTACACTCTCGATGATTTTTTATTTCAtaa          >  2:187382/1‑147 (MQ=11)                                                                                                ttCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATCACTACag    >  1:199565/1‑149 (MQ=34)                                                                                                ttCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTAAATGGTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATCACTACag    >  1:505980/1‑149 (MQ=255)                                                                                                  cAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATCACTACagag  >  1:47941/1‑149 (MQ=32)                                                                                                                                                |                                                                                                       TATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATCACTACAGAG  >  NC_000913_3_hsa_tpiA/3426711‑3426956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.