New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	1028361 =	NA (NA)	6 (0.160)	5/254	4.8	NA	intergenic (+2/+43)	yccU/hspQ	putative CoA‑binding protein/heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA‑binding protein
	?	NC_000913_3_hsa_tpiA	1028395 =	NA (NA)					intergenic (+36/+9)	yccU/hspQ	putative CoA‑binding protein/heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA‑binding protein
Rejected: Coverage evenness skew score above cutoff.

ACCTGGCTGAAGCCCAGCTAAGTAGCGAATTGCAGGATGAACATCCTGAACAGCCATCCATGGATGAGCTGGCGCAGACCATCCGCAAACAACTCCAGGCCCCGCGTCTGCGTAACTAATCCCTGAACAAATCCCCGGAAGGTTTTTGCCTTCCGGGGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_hsa_tpiA/1028522‑1028361 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttccggggatttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAGCCAGGTAGGTATGAACCGGT  >  NC_000913_3_hsa_tpiA/1028395‑1028536                                                                                                                                                                                                                                                                                                                  ACCTGGCTGAAGCCCAGCTAAGTAGCGAATTGCAGGATGAACATCCTGAACAGTCATCCATGGATGAGCTGGCGCAGACCATCCGCAAACAACTCCAGGCCCCGCGTCTGCGTAACTAATCCCTGAAAAAATCCCCGGAAGGTTTTTGC                                                                                                                                                             >  1:491556/1‑149        TGAAGCCCAGCTAAGTAGCGAATTGCAGGATGAACATCCTGAACAGCCATCCATGGATGAGCTGGCGCAGACCATCCGCAAACAACTCCAGGCCCCGCGTCTGCGTAACTAATCCCTGACCAAATCCCCGGAAGGTTTTGGCCATCCGG                                                                                                                                                      >  2:321501/1‑149        TGAAGCCCAGCTAAGTAGCGAATTGCAGGATGAACATCCTGAACAGCCATCCATGGATGAGCTGGCGCAGACCATCCGCAAACAACTCCAGGCCCCGCGTCTGCGTAACTAATCCCTGAACAAATCCCCGGAAGGTTTTTGCCTTCCGG                                                                                                                                                      <  1:43376/149‑1                                                                                                                             GAACAAATCCCCGGAAGGTTTTTGCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCA                                                              >  1:127178/1‑120                                                                                                                             GAACAAATCCCCGGAAGGTTTTTGCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCA                                                              <  2:127178/120‑1                                                                                                                                      CCCGGAAGGTTTTTGCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTT                                   >  1:611579/1‑138                                                                                                                                      CCCGGAAGGTTTTTGCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTT                                   <  2:611579/138‑1                                                                                                                                      CCCGGAAGGTTTTTGCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGC                                                                                                                  >  1:219258/1‑59                                                                                                                                      CCCGGAAGGTTTTTGCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGC                                                                                                                  <  2:219258/59‑1                                                                                                                                                      CTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAGCCAGGTAGGTATGA        >  1:600646/1‑149                                                                                                                                                        TCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTTGAGGTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAGCCAGGTAGGTATGAAC      <  2:50907/149‑1                                                                                                                                                            GGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAGCCAGGTAGGTATGAACCGGT  <  1:362238/149‑1                                                                                                                                                            GGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAGCCAGGTAGGTATGAACCGGT  <  2:600646/149‑1                                                                                                                                                            GGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCAGTTGGTCTTCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAGCCAGGTAGGTATGAACCGGT  <  1:360013/149‑1                                                                                                                                                                                                                                                                                                                  ACCTGGCTGAAGCCCAGCTAAGTAGCGAATTGCAGGATGAACATCCTGAACAGCCATCCATGGATGAGCTGGCGCAGACCATCCGCAAACAACTCCAGGCCCCGCGTCTGCGTAACTAATCCCTGAACAAATCCCCGGAAGGTTTTTGCCTTCCGGGGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_hsa_tpiA/1028522‑1028361 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttccggggatttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAGCCAGGTAGGTATGAACCGGT  >  NC_000913_3_hsa_tpiA/1028395‑1028536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.