New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA 3895222 =37 (0.880)6 (0.160) 6/258 4.4 13.8% intergenic (+4/+50) chrR/adeP chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter
?NC_000913_3_hsa_tpiA 3895257 = 41 (1.070)intergenic (+39/+15) chrR/adeP chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTC  >  NC_000913_3_hsa_tpiA/3895078‑3895368
                                                                                                                                                |                                                                                                                                                  
aagcaGCTGGAATTTATGGGTGGCGTGAGTCAGAAAAAAGTTGATCCGCAAACCGTAGGAGTGATTGATCAGGGTACGCTGGACCACCTTACCGGGCAATTGCCCGCATTTGGTTTGTTTATTCAGGGAGTTAAGATCTAAATaaaaaa                                                                                                                                                <  2:351555/145‑1 (MQ=255)
     gCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGc                                                                                                                                           >  2:520286/1‑149 (MQ=255)
             ttATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATc                                                                                                                                   <  1:520286/149‑1 (MQ=255)
                         tGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAACCATGCATGGCggg                                                                                                                       >  1:266667/1‑149 (MQ=255)
                                 aaCAAAGTTGATCCGCAACACGGGGAATTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAAc                                                                                                               <  2:407789/149‑1 (MQ=255)
                                 aaCAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGGTTTGaaa                                                                                                               >  1:69848/1‑148 (MQ=255)
                                   cAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAAcgc                                                                                                             <  2:507134/149‑1 (MQ=255)
                                    aaaGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCTGGTTTTTACcgcg                                                                                                            >  2:437780/1‑149 (MQ=255)
                                      aGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTATAGATCTAAGTAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCt                                                                                                          >  1:208935/1‑149 (MQ=255)
                                       gTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTa                                                                                                         >  1:211509/1‑149 (MQ=255)
                                            tCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGAt                                                                                                    <  1:621927/149‑1 (MQ=255)
                                                cAAACCGGAGAACTGATTGATCAGGGTACGCTGGACCACCTGACCGCGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTCAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCTCTATCGATTTTa                                                                                                <  1:712573/149‑1 (MQ=255)
                                                    ccGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGa                                                                                            <  2:211509/149‑1 (MQ=255)
                                                              gattgatCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATaa                                                                                  <  2:512445/149‑1 (MQ=255)
                                                                        ggTACCCTGACCCATCTGACAGGACAATCCACCGCATGTGGTGACTCTATTCAGCGAGTTAAGCTCTAAAGAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAACGTCGATAAAGACAATCtt                                                                        <  2:625191/149‑1 (MQ=255)
                                                                          tACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTGTATACACCGAGGTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGCTTCGAACGCGCTATCGATTTTAGTGAGCGTCGATAACGACagccgttc                                                                      >  2:525146/1‑142 (MQ=255)
                                                                           aCGCTGGACCACCTGACCGGGCAAATGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAg                                                                     <  1:211510/149‑1 (MQ=255)
                                                                              cTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAGGACAATCTTCAGGAt                                                                  >  1:103339/1‑149 (MQ=255)
                                                                                            cGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGTTTAAACAGCAGCGCaa                                                    >  2:385061/1‑149 (MQ=255)
                                                                                            cGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCaa                                                    <  1:707426/149‑1 (MQ=255)
                                                                                                aaaTTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTGCAGGATAAACAGCAGCGCAACgat                                                <  1:303228/148‑1 (MQ=255)
                                                                                                      aCCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTa                                                                                                <  1:157415/95‑1 (MQ=255)
                                                                                                      aCCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTa                                                                                                >  2:157415/1‑95 (MQ=255)
                                                                                                      aCCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCACTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTAc                                          >  2:422046/1‑149 (MQ=255)
                                                                                                          cATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATGCTAACGATAAACAGCAGCGCAACGATGATTACGCAc                                      <  1:180034/149‑1 (MQ=255)
                                                                                                           aTTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCCGCGCAACGATGATTACGCACg                                     >  2:180034/1‑149 (MQ=255)
                                                                                                           aTTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACg                                     >  1:55253/1‑149 (MQ=255)
                                                                                                                            aGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGGTTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGAGTACGCACGGGCTTAGATCCCGCaac                    >  1:90698/1‑147 (MQ=255)
                                                                                                                            aGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGCCTTAGATCACGCAgc                    >  1:184112/1‑148 (MQ=255)
                                                                                                                            aGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGAGTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACCCaca                    >  2:105165/1‑147 (MQ=255)
                                                                                                                            aGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAAACATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATAATTACGCACGGGCTTAGATCACGCAGa                    >  2:126251/1‑149 (MQ=255)
                                                                                                                             gCGAGTTAATATCTAAATAAAAGCCCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGAc                   <  1:354233/149‑1 (MQ=255)
                                                                                                                                          taaataaaAAACCCGCCAGCAATCATGCATGGCGGGGTTTTAACGCGCTATCGAGTTTAGTGAGTGTCGCTAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGAt      >  1:103986/1‑149 (MQ=255)
                                                                                                                                           aaatacaAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATTATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGAtt     <  1:12242/149‑1 (MQ=255)
                                                                                                                                            aataaaAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATc                                                                          <  1:661171/79‑1 (MQ=255)
                                                                                                                                            aataaaAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATc                                                                          >  2:661171/1‑79 (MQ=255)
                                                                                                                                              taaaAAACCCGCCAGCAATCGTGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTtc  <  2:266667/149‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                  
AACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTC  >  NC_000913_3_hsa_tpiA/3895078‑3895368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.