| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 59280 = | 71 (1.180) | 6 (0.110) | 6/248 | 6.8 | 8.7% | intergenic (+1/+407) | yabP/rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent |
| ? | NC_000913_3_hsa_tpiA | 59320 = | 63 (1.190) | intergenic (+41/+367) | yabP/rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTAGCAGTCTGGTTGGCGATGCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_hsa_tpiA/59442‑59280‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccccttcaaccttagcAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAG‑AGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACAATCAGAA > NC_000913_3_hsa_tpiA/59320‑59466 TTAGCAGTCTGGTTGGCGATGCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCC > 1:917707/1‑149 GCAGTCTGGTTGGCGATGCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCCCT < 1:331720/149‑1 CAGTCTGGTTGGCGATGCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCCCTT < 2:975613/149‑1 TCTGGTTGGCGATGCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAA > 2:893132/1‑149 TCTGGTTGGCCATGCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTCCGCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAA < 1:511306/149‑1 GTTGGCGATGCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTGGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAACCTT > 2:225027/1‑149 TTGGCCATGCCCATCGCGGTGATTCGTGTCCTGGCCGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAACCTTA < 2:35856/149‑1 GCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAAC > 2:826726/1‑137 GCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAAC < 1:826726/137‑1 GCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGC > 1:348170/1‑104 GCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGC < 2:348170/104‑1 CACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAACCTT > 1:103055/1‑115 CACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAACCTT < 2:103055/115‑1 AATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGATG‑GGTCTAGTGACGCGAGGCGTCGTGCAGGACACGGATCA > 1:25270/1‑149 GTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTA < 1:145294/82‑1 GTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTA > 2:145294/1‑82 GAAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGAATGATGAGCTAGAGAAG‑AGGCTAGTGACGCAAGGCGTCGTGCGGGACACGGATCACCGAGATGGGCAACGCCAACGAGACc > 2:437278/1‑148 AGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGA < 1:813182/41‑1 AGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGA > 2:813182/1‑41 GCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAG‑AGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCAT > 2:919215/1‑149 CCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAG‑AGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGA > 2:428788/1‑149 CCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAG‑AGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATGAGCCCATGA > 1:401295/1‑149 CCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAG‑AGGCAAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGACAACCAGACTGCTAATTAGACCATGA > 2:571611/1‑149 ccTCACCCTTAGCAGAAGCGTGTGATAATTTAACAATTAGAAAGACCTGCATGATGAGCTAGAGAAG‑AGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAAT < 1:974359/147‑1 TCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCACGATGAGCTAGAGAAG‑AGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAA < 1:620987/149‑1 ACCTTAGCAGTAGCGTGGGATGATTGCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAG‑AGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACAA > 1:297001/1‑149 ACCTTAGCAGTAGAGAGGGATGATTTCCCAAATAGAAAAACCTGCATGATGAGCTATAGAAG‑AGGTTAGGGAAGCAAGGCGGCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGGTAATTAGCCCATGAAAAACAA > 2:1035065/1‑149 CCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAG‑AGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACAAT > 1:425133/1‑149 CTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGCGCTCG‑GACGCAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACAATC < 1:1026517/149‑1 CTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAG‑AGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCCCACTGCTAAGGAGCCCCTGAATAACAAac > 2:217329/1‑147 CTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAG‑AGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACAATC > 1:641333/1‑149 CTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAG‑AGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAAATAGCCCATGAATACCAAcc > 1:87907/1‑147 TTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGGTGAGCTAGAGAAG‑AGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCACATGAATAACAATCA > 2:162183/1‑149 TTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAG‑AGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACAATCA < 2:425133/149‑1 GCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAG‑AGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGCTCCTCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACAATCAGAA < 1:564839/149‑1 TTAGCAGTCTGGTTGGCGATGCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_hsa_tpiA/59442‑59280‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccccttcaaccttagcAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAG‑AGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACAATCAGAA > NC_000913_3_hsa_tpiA/59320‑59466 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |