New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 1203761	31 (0.810)	4 (0.110)	4/264	4.8	11.9%	coding (494/558 nt)	ymfL	e14 prophage; putative DNA‑binding transcriptional regulator
	?	NC_000913_3_hsa_tpiA	= 1203775	30 (0.830)					coding (508/558 nt)	ymfL	e14 prophage; putative DNA‑binding transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATTCGTTCAGCAATCGAAGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATTTCAGAAAGTAATGACGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTCCTGTACCGGGTGGAAAAGCGAA  >  NC_000913_3_hsa_tpiA/1203616‑1203892                                                                                                                                                  |                                                                                                                                    aTTCGTTCAGCAATCGAAGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATTTCAGAAAGTAATGACGCCCTCGa                                                                                                                                  <  1:28871/149‑1 (MQ=255) aTTCGTTCAGCAATCGAAGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACCAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATTTCAGAAAGTAATGACGCCCGCGa                                                                                                                                  <  2:390268/149‑1 (MQ=255)              tCGAAGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATTTCAGAAAGTAATGACGCCCGCGAGTGTGCAGCTCCg                                                                                                                     <  1:220858/149‑1 (MQ=255)                 aaGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATTTCAGAAAGTCATGACCCCCGCGAGTGTGCAGCTCCgggt                                                                                                                  >  2:647937/1‑148 (MQ=255)                 aaGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCGCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATTTCAGAAAGTAATGAGGCCCGCGAGTGTGCAGCTCCGGGc                                                                                                                  >  1:291774/1‑149 (MQ=255)                            gTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATTTCAGAAAGTAATGACGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTc                                                                                                       >  2:610615/1‑149 (MQ=255)                               gAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATTTCAGAAAGTAATGACGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGAt                                                                                                    >  2:73624/1‑149 (MQ=255)                                    gCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATTTCAGAAAGTAATGACGCCCGCGAGTGTGTAGCTCCGGGCGTCGTGGCGTCGATTGCtt                                                                                               >  1:583783/1‑149 (MQ=255)                                       agcgaagaCAGCAATGAGAGACCAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGGCTACAAAATCTTTTGCATTTCAGAAAGTAATGACGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTg                                                                                            <  2:467700/146‑1 (MQ=255)                                           aagaCAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAA‑TTTTTGCATTTCAGAAAGTAATGACGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTtgt                                                                                       >  2:521214/1‑149 (MQ=255)                                             gcaactaaTTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATATTTTGCTTTACATAAAGTAATGACGACAAAATTACCGCAGCGCCGGGCGTCGTGGCGTCGATTGCTTCTGGTtgtg                                                                                      <  2:652342/143‑1 (MQ=255)                                             gaCAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATTTCAGAAAGTAATGACGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTtgtg                                                                                      <  2:167292/149‑1 (MQ=255)                                                     ttAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATTTCAGAAAGTAATGACGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACt                                                                              >  1:283589/1‑149 (MQ=255)                                                                       tctcAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATTTCAGAAAGTAATGACGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTaa                                                            >  1:120737/1‑149 (MQ=255)                                                                         tcAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATTTCAGAAAGTAATGACGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTaaca                                                          >  1:107204/1‑149 (MQ=255)                                                                           aaTTTCGAAGCTGAAGTGGGAGGGAGCACTTGTCGACAAAATTTTTTGCATGTCAGAAAGTAATGACGGCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTCGTTGTGGAGAAACTAACGCATGAACAGTTTaacaac                                                        <  2:170552/149‑1 (MQ=255)                                                                            agttggAAGCTGCAGGAGCAGGAAGCACTTGTCTACAAAATTGGTTGCATTTCAGAAAGTAATGACGCGCGCGAGTGTGCAGATCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAacaaca                                                       <  2:12920/144‑1 (MQ=255)                                                                              ttCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATTTCAGAAAGTAATGACGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAacaca                                                     >  2:151313/1‑149 (MQ=255)                                                                                          ggAGCATGCAGCACTTGGCTACAAAATTTTTTGCATTTCAGAAAGTAATGACGCCCGCGAGTGTGCAGCTCCGGGAGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGtcgctc                                         <  2:192580/149‑1 (MQ=255)                                                                                                 gcagcaCTTGTCTACAAAATTTTTTGCATTTCAGAAAGTAATGACGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTg                                  >  1:244260/1‑149 (MQ=255)                                                                                                   agcaCTTGTCTACAAAA‑TTTTTGCATTTCAGAAAGTAATGACGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGAtt                               <  1:521214/149‑1 (MQ=255)                                                                                                        ttGTCTACAAAATTTTTTGCATTTCAGAAAGTAATGACGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTgcgc                           <  2:244260/149‑1 (MQ=255)                                                                                                              aCAAAATTTTTTGCATTTCAGAAAGTAATGACGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGAGATTCCTg                     <  2:255275/149‑1 (MQ=255)                                                                                                              aCAAAATTGTTTGCATTTCAGAAAGTAATGACGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTCCTg                     <  2:417516/149‑1 (MQ=255)                                                                                                                       tttGCATTTCAGAAAGTAATGACGCGCGCGAGTGTGCAGGTCCGGGCGTCGTGGCGTCGATTGCTTCTTGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTGCTGTACCGGGTg            <  2:157500/149‑1 (MQ=255)                                                                                                                        ttGCATTTCAGAAAGTAATGACGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTCCTGTACCGGGTgg           >  1:4723/1‑149 (MQ=255)                                                                                                                            aTTTCAGAAAGTAATGACGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTCCTGTACCGGGTGGaaaa       <  1:151313/149‑1 (MQ=255)                                                                                                                             tttCAGAAAGTAATGACGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCCACTGATTGGGGTTCGTGTACCGGGTGGCAAAg      >  1:411838/1‑149 (MQ=255)                                                                                                                                 aGAAAGTAATGACCCCCGCGAGCGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTCCTGTACCGGGTGGAAAAGCGaa  <  1:105321/149‑1 (MQ=255)                                                                                                                                            aCGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTcc                       <  1:505257/117‑1 (MQ=255)                                                                                                                                            aCGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTcc                       >  2:505257/1‑117 (MQ=255)                                                                                                                                                  |                                                                                                                                    ATTCGTTCAGCAATCGAAGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATTTCAGAAAGTAATGACGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTCCTGTACCGGGTGGAAAAGCGAA  >  NC_000913_3_hsa_tpiA/1203616‑1203892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.