| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 2700568 | 37 (0.940) | 4 (0.120) | 4/244 | 4.6 | 11.4% | noncoding (49/77 nt) | ohsC | sRNA antisense regulator of shoB toxin |
| ? | NC_000913_3_hsa_tpiA | = 2700581 | 30 (0.880) | noncoding (62/77 nt) | ohsC | sRNA antisense regulator of shoB toxin | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_hsa_tpiA/2700418‑2700568‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaaaaagtaaaacccccgAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAATCTTTAGCATAAAAACTCGAGCCTTTACGAAGAAAGCAA < NC_000913_3_hsa_tpiA/2700581‑2700433 agCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAGAGATAAGTACACTAATCGATAATCGCTGTTGTTGAGGGTACATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCC > 2:635451/3‑150ATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCC > 1:452568/1‑150 TTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTT > 2:272891/1‑150 CGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACT < 1:272891/150‑1 TAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAA < 1:664498/97‑1 TAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAA > 2:664498/1‑97 AAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTT > 1:27817/1‑76 AAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTT < 2:27817/76‑1 CACAAAATTAAAGTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTA < 1:513921/56‑1 CACAAAATTAAAGTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTA > 2:513921/1‑56 GTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAATCTTTAGCATAAAAACTCGAGCCTTTAC > 1:190337/1‑150 GTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAATCTTTAG < 1:458276/129‑1 GTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAATCTTTAG > 2:458276/1‑129 CCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAATCTTTAGCATAAAAACTCGAGCCTTTACGAAGAAAGC > 1:39814/1‑150 GAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAATCTTTAGCATAAAAACTCGAGCCTTTACGAAGAAAGCAA < 2:190337/150‑1 ATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_hsa_tpiA/2700418‑2700568‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaaaaagtaaaacccccgAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAATCTTTAGCATAAAAACTCGAGCCTTTACGAAGAAAGCAA < NC_000913_3_hsa_tpiA/2700581‑2700433 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |