New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 832386NA (NA)7 (0.120) 5/266 7.5 NA noncoding (98/98 nt) RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913_3_hsa_tpiA 899726 = NA (NA)noncoding (31/98 nt) RIP82 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP82 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

TGCAGCTTTTCGATATGTTCCCGCATACCGCGCACTATGAAGTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCACTGATTTT  >  NC_000913_3_hsa_tpiA/899578‑899873
                                                                                                                                                    |                                                                                                                                                   
tGCAGCTTTTCGATATGTTCCCGCATACCGCGCACTATGAAGTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGcc                                                                                                                                                     >  1:844189/1‑149 (MQ=255)
  cAGCTTTTCGATATGTTCCCGCATACCGCGAACTATGAAGTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACATAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTa                                                                                                                                                   >  2:607/1‑149 (MQ=255)
   aGCTTTTCGATATGTTCCCGCATACCGCGCACTATGAAGTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCTTGTGCAGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCCGCGTACACGCCTTATCCGGCCtcc                                                                                                                                                  >  2:317176/1‑147 (MQ=255)
     cTTTTCGATATGTTCCCGCATACCGCGCACTATGAAGTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGAATATGCGGCTTCAGATTGCTGACAAAGTGCGAGCAGTTCATGCGGGGTGCGACGAACACGCCTTATCCGACCTACaa                                                                                                                                                >  1:479532/1‑149 (MQ=255)
        ttCGATATGTTCCCGCATACCGCGCACTATGAAGTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAg                                                                                                                                             >  1:117748/1‑149 (MQ=255)
           gATATGTTCCCGCATACCGCGCACTATGAAGTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGt                                                                                                                                          >  1:271319/1‑149 (MQ=255)
                gtcaccGCATACCGCGCACAGTGAAGTGCTGAGGCTGCTGGGGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCaaa                                                                                                                                     <  2:78758/145‑1 (MQ=25)
                   cccGCATACCGCGCACTATGAAGTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTc                                                                                                                                  <  1:48325/149‑1 (MQ=255)
                   cccGCATACCGCGCACTATGAAGTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGAATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTc                                                                                                                                  <  1:302464/149‑1 (MQ=255)
                    ccGCATACCGCGCACTATGAAGTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCa                                                                                                                                 >  2:994840/1‑149 (MQ=255)
                     cGCATACCGCGCACTATGAAGTGCTGACGCTGCTGGTGAAGCAATAAAGAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCAGCGTAAACGCCTTCTCCGGCCTACAAAAGAGTGCaacaccaa                                                                                                                                >  2:658565/1‑143 (MQ=37)
                     cGCATACCGCGCACTATGAAGTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCaa                                                                                                                                >  1:442520/1‑149 (MQ=255)
                     cGCATACCGCGCACTATGAAGTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCaa                                                                                                                                >  2:431020/1‑149 (MQ=255)
                     cGCATACCGCGCACTATGAAGTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCaa                                                                                                                                >  1:307304/1‑149 (MQ=255)
                        aTACCGCGCACTATGAAGTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATAc                                                                                                                             >  1:338813/1‑149 (MQ=255)
                         tACCGCGCACTATGAAATGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACa                                                                                                                            >  1:905224/1‑149 (MQ=255)
                            cgcgCACTATGAAGTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTg                                                                                                                         >  1:733249/1‑149 (MQ=255)
                                  cTATGGAGGGCTAGCGGTGGTGGTGAAGCAATAATAAAGCCGCATGTGCGGCTTCAGGTTGCTTACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGGCTACAAAAGCGTGCAAATTCAATACATTGCATggg                                                                                                                   <  2:637522/149‑1 (MQ=21)
                                  cTATGAAGTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATggg                                                                                                                   >  1:31287/1‑149 (MQ=255)
                                   tATGAAGTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAACAGCGTGCAAATTCAATACATTGCATGGGc                                                                                                                  >  1:229160/1‑149 (MQ=255)
                                   tATGAAGTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGc                                                                                                                  <  1:431020/149‑1 (MQ=255)
                                     tGAAGTGCTGACGCTGCTGGTGAAGGAATAAAGAAGCCGCATGTGCAGCTTCAGATTGCTGACAAAGGGCGCGTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCAAGGGCCa                                                                                                                >  1:939317/1‑149 (MQ=25)
                                      gAAGTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCAt                                                                                                               >  1:869596/1‑149 (MQ=255)
                                      gAAGTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTGATCCGGCCTACAGAAGCGTGCAAATTCAATAATTTGCATGGGCAAt                                                                                                               >  1:291381/1‑149 (MQ=25)
                                        aGTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGt                                                                                                             >  2:324867/1‑149 (MQ=255)
                                         gTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTCAACGCCTTATCCGGCCTGCAAAAGCGTGCAAATTCAATACCTCTCATGAGCCATGTa                                                                                                            >  2:481229/1‑149 (MQ=25)
                                            cTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGc                                                                                                         >  1:39311/1‑149 (MQ=255)
                                             tGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGcc                                                                                                        >  1:839519/1‑149 (MQ=255)
                                             ggACGCTGGCGGGGAAGGAAAAAAAAAGCCGGATGGGCGGCTTCAGATTGCTGAAAAAGTGGGGGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGcc                                                                                                        <  2:427964/148‑1 (MQ=21)
                                              gACGCTGCGGGTGAAGCACTAAAAAAGCCGCATGCGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCt                                                                                                       <  2:753914/149‑1 (MQ=255)
                                                tgctgctGGTGAAGTATTAAGAAAGCCGCATGTGGGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGa                                                                                                     <  2:425310/148‑1 (MQ=255)
                                                cGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACACAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGa                                                                                                     >  1:679942/1‑149 (MQ=255)
                                                 gctgctGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGAt                                                                                                    <  2:31287/149‑1 (MQ=255)
                                                 gctgctGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGAt                                                                                                    <  1:368543/149‑1 (MQ=255)
                                                 gctgctGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGAt                                                                                                    >  2:123405/1‑149 (MQ=255)
                                                 gctgctGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTACGCCTgct                                                                                                    >  2:118626/1‑147 (MQ=255)
                                                   cgcttgggAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATaa                                                                                                  <  2:780745/142‑1 (MQ=255)
                                                    gctgGTGAAGCAATAAAAAAGCCGCATGTGCGGCTGCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAg                                                                                                 <  2:1012887/149‑1 (MQ=255)
                                                     caggTGAAGCAAGATAAAACCCTGATGTGCGATTTGATAGTGGTGACAAAGTGCGCGTTGGTTATGCCGGATGCCGCGTAAATGCCTTATCCGGCTTACCAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGc                                                                                                <  2:59247/147‑1 (MQ=18)
                                                        gTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGTGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTa                                                                                             >  1:220601/1‑149 (MQ=255)
                                                          gAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAgc                                                                                           >  1:573218/1‑149 (MQ=255)
                                                           aaGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAgcg                                                                                          >  2:636963/1‑149 (MQ=255)
                                                               aaTAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATc                                                                                      <  2:966088/149‑1 (MQ=255)
                                                               aaTAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATc                                                                                      <  1:865693/149‑1 (MQ=255)
                                                                 tAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGTGTTGTTTATGCCGGATGCGGCGTAAACGCCTTAGCCGGCCTACAAAAGCTTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAg                                                                                    <  2:252689/149‑1 (MQ=255)
                                                                  aaaaaaGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTAGCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAgg                                                                                   <  2:1016253/149‑1 (MQ=255)
                                                                   aaaaaGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGc                                                                                  >  2:613431/1‑149 (MQ=255)
                                                                    aaaaGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCa                                                                                 >  2:204533/1‑149 (MQ=255)
                                                                         ccGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGTCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtttt                                                                            >  1:551744/1‑149 (MQ=255)
                                                                           gCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTAc                                                                          >  1:98795/1‑149 (MQ=255)
                                                                            cATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTAcc                                                                         <  1:324867/149‑1 (MQ=255)
                                                                               ctgCGTCTTCAGTTTGCTGACAAAGTGCGCGTTCTTTATGCCGGATGCGGCGTAAACGCCTGTTCCGGCCTACAAAACCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCttt                                                                      <  1:346965/148‑1 (MQ=18)
                                                                                tgCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTg                                                                     >  1:574470/1‑149 (MQ=255)
                                                                                 gCGGCTTCAGATTGCTGACCAAGTGCGAGTTGTTTATGCCGGCTGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGGGTAGCGCATCAGGCAATTTTACCTTAGt                                                                    >  2:758098/1‑149 (MQ=21)
                                                                                 gCGGCTTCAGATTGCTGACAAAGTGAGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGt                                                                    >  1:122257/1‑149 (MQ=255)
                                                                                  cGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGtc                                                                   <  1:636963/149‑1 (MQ=255)
                                                                                    gCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGtcat                                                                 >  2:349300/1‑149 (MQ=255)
                                                                                     cTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGtcatc                                                                >  1:704385/1‑149 (MQ=255)
                                                                                      ttCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGtcatca                                                               <  2:855242/149‑1 (MQ=255)
                                                                                         aGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTACCTTTGTCATCAGtc                                                            >  1:477463/1‑149 (MQ=255)
                                                                                         aGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGtc                                                            <  1:994840/149‑1 (MQ=255)
                                                                                         aGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGtc                                                            <  2:827712/149‑1 (MQ=255)
                                                                                          gATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGtct                                                           <  1:379953/149‑1 (MQ=255)
                                                                                               cTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGc                                                      >  1:42725/1‑149 (MQ=255)
                                                                                                    aaaGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTGTCAAGCCGCgg                                                 >  2:826286/1‑149 (MQ=255)
                                                                                                       gTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTg                                              <  1:790811/149‑1 (MQ=255)
                                                                                                       gTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAAAATCAAGCCGCGGTTg                                              >  2:939736/1‑149 (MQ=255)
                                                                                                                 tttATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTg                                    >  1:781935/1‑149 (MQ=255)
                                                                                                                   tATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGaa                                  <  1:929721/149‑1 (MQ=255)
                                                                                                                       ccGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCt                                     >  1:577932/1‑142 (MQ=255)
                                                                                                                       ccGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCt                                     <  2:577932/142‑1 (MQ=255)
                                                                                                                        cGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCttt                                                                      <  1:496001/108‑1 (MQ=255)
                                                                                                                        cGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCttt                                                                      >  2:496001/1‑108 (MQ=255)
                                                                                                                          gATGCGTCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACt                           <  2:551744/149‑1 (MQ=255)
                                                                                                                            tGCGGCGTACGCGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACtgt                         <  1:353906/149‑1 (MQ=255)
                                                                                                                            tGCGGCGTAATCGCCTGATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGAAATTGTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACtgt                         <  1:35533/149‑1 (MQ=255)
                                                                                                                                  gTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAAc                   <  2:122257/149‑1 (MQ=255)
                                                                                                                                    aaaCGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGa                                                                                                     <  2:504523/65‑1 (MQ=255)
                                                                                                                                    aaaCGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGa                                                                                                     >  1:504523/1‑65 (MQ=255)
                                                                                                                                     aaCGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGTCTGATAAGCGTAGCGCATCAGGCAAGTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCAc                >  1:926157/1‑149 (MQ=255)
                                                                                                                                     aaCGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCAc                >  1:214938/1‑149 (MQ=255)
                                                                                                                                       cGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTg              <  2:931483/149‑1 (MQ=255)
                                                                                                                                        gCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGCCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTgg             >  1:956049/1‑149 (MQ=255)
                                                                                                                                            tttCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCAc         <  2:119358/147‑1 (MQ=255)
                                                                                                                                            tATCCGGCCTACAAAAGCGTGCAAATTCAATGCATTTCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACGGTGGGAACCACTGGTCAc         <  2:479532/149‑1 (MQ=255)
                                                                                                                                            tATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCAc         <  1:701758/149‑1 (MQ=255)
                                                                                                                                            tATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCAc         <  1:204533/149‑1 (MQ=255)
                                                                                                                                                cGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCCAGCAGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACCGGTAACTGAt     >  1:402056/1‑149 (MQ=255)
                                                                                                                                                cGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTTTGGTAACCCCTGGTCACTgct     >  2:503537/1‑147 (MQ=255)
                                                                                                                                                 ggCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAg                                                       <  2:82136/98‑1 (MQ=255)
                                                                                                                                                 ggCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAg                                                       <  2:605673/98‑1 (MQ=255)
                                                                                                                                                 ggCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAg                                                       >  1:605673/1‑98 (MQ=255)
                                                                                                                                                 ggCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAg                                                       >  1:82136/1‑98 (MQ=255)
                                                                                                                                                   ccTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATATTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTACTGAATCTTACTGTGGGAACCACTGGTCACTGAttat  >  1:287974/1‑147 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
TGCAGCTTTTCGATATGTTCCCGCATACCGCGCACTATGAAGTGCTGACGCTGCTGGTGAAGCAATAAAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCACTGATTTT  >  NC_000913_3_hsa_tpiA/899578‑899873

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.