| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 4383639 | 65 (1.370) | 4 (0.090) | 4/260 | 6.3 | 6.3% | intergenic (+37/‑182) | epmA/yjeM | Elongation Factor P Lys34 lysyltransferase/putative transporter |
| ? | NC_000913_3_hsa_tpiA | = 4383646 | 59 (1.330) | intergenic (+44/‑175) | epmA/yjeM | Elongation Factor P Lys34 lysyltransferase/putative transporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGAAAGTCGGTATGCCTGACTGTTCCGGCGTGGCATTAGGTGTTGATCGTCTGGTGATGTTGGCGCTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_hsa_tpiA/4383483‑4383639‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaatggcgCTTATCACGCCATTCTTCGCTGTTAATTCAGTAATTTTTCAGAATTATGCCCGGTCAACGCTAAAGGCGATGACTTCAGCCAGTGTCTCCGCGCCCAGCGCCAACATCACCAGACGATCAACACCTAATGCCACGCCGGAACAGTCAG < NC_000913_3_hsa_tpiA/4383646‑4383499 TTGAAAGTCGGTATGCCTGACTGTTCCGGCGTGGCATTAGGTGTTGATCGTCTGGTGGTGGTGGCGCTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAA > 1:377595/1‑149 AGTCGGTATGCCTGACTGTTCCTGCGTGGCATTAGGTGTTGATCGTCTGGTGATGTTGGCGCTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTTAATTAACAGCGAAGAATG > 1:547973/1‑149 ACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGC < 1:248359/76‑1 ACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGC > 2:248359/1‑76 ATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGCTTATCACGCCATTCTT > 1:509821/1‑81 ATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGCTTATCACGCCATTCTT < 2:509821/81‑1 TTACTGAATTAACAGCGAAGAATGGCGCTTATCACGCCATTCTTCGCTGTTAATTCAGTAA > 1:86921/1‑61 TTACTGAATTAACAGCGAAGAATGGCGCTTATCACGCCATTCTTCGCTGTTAATTCAGTAA < 2:86921/61‑1 GAATGGCGCTTATCACGCCATTCTTCGCTGTTAATTCAGTAATTTTTCAGAATTATGCCCGGTCAACGCTAAAGGCGATGACTTCAGCCAGTGTCTCCGCGCCTAGCGCCACCATCACCAGACGATCAACACCTAATGCCACGCCGGAA < 1:666276/149‑1 ATGGCGCTTATCACGCCATTCTTCGCTGTTAATTCAGTAATTTTTCAATCTACAGGCCTGGCAACGCTAAATGCGATGACTTCAGCCAGTGTCTCCGCGCCCAGCGCCAACATCACCAGACGATCAACACCTAATGCCACGCCGGAACA < 1:583661/149‑1 GCTTATCACGCCATTCTTCGCTGTTAATTCAGTAATTTTTCAGAATTATGCCCGGTCAACGCTAAAGGCGATGACTTCAGCCAGTGTCTCCGCGCCCAGCGCCAACATCACCAGACGATCAACACCTAATGCCACGCCGGAACAGTCAG < 1:8065/149‑1 TTGAAAGTCGGTATGCCTGACTGTTCCGGCGTGGCATTAGGTGTTGATCGTCTGGTGATGTTGGCGCTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_hsa_tpiA/4383483‑4383639‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaatggcgCTTATCACGCCATTCTTCGCTGTTAATTCAGTAATTTTTCAGAATTATGCCCGGTCAACGCTAAAGGCGATGACTTCAGCCAGTGTCTCCGCGCCCAGCGCCAACATCACCAGACGATCAACACCTAATGCCACGCCGGAACAGTCAG < NC_000913_3_hsa_tpiA/4383646‑4383499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |