Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_hsa_tpiA 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_hsa_tpiA 1978503–1979269 1979278 10–776 39 [0] [0] 39 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 19785020 (0.000)38 (0.850) 37/262 0.3 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913_3_hsa_tpiA 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

TGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAA  >  NC_000913_3_hsa_tpiA/1979133‑1979423
                                                                                                                                                  |                                                                                                                                                
aaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtat                                                                                                                                                <  1:341015‑M2/3‑1 (MQ=255)
   gtggtctttacgcttatctaagatttttcataaatcgacgcaacgtgactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatgacacaaaacactcaattacttaacataaatgTATAAg                                                                                                                                             <  2:748727‑M2/6‑1 (MQ=255)
              acgtatctaagatttttcctaaatcgacgcaactgtactcgtcacgacacgcacgtacaacggaggggggttgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataactgTATAAGTCATACttttg                                                                                                                                  <  2:711000‑M2/17‑1 (MQ=255)
                ttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgGATAAGTCATACtttggtt                                                                                                                                >  1:177029‑M2/131‑149 (MQ=255)
                      aagatttttcctaaagcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                                                                                                          <  1:487793‑M2/25‑1 (MQ=255)
                       agatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTCGgtg                                                                                                                         >  2:784670‑M2/124‑149 (MQ=255)
                         atttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                            >  2:763124‑M2/122‑144 (MQ=255)
                         atttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                            <  1:763124‑M2/23‑1 (MQ=255)
                                        acgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaa                                                                                                        >  1:117171‑M2/107‑149 (MQ=255)
                                          gcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacacacaattacttgacataaattCATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa                                                                                                      <  2:562911‑M2/45‑1 (MQ=255)
                                              ctgtactcgtccctacacgcacatacaacggaggggggcggcgatttccaataatgcgtgatgcatatcacacaaaacactcaattacttaacataaatgTATAATTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                                                                  <  1:292062‑M2/49‑1 (MQ=255)
                                                 tactcttcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc                                                                                               <  1:465919‑M2/52‑1 (MQ=255)
                                                    tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCACTCTGTTAAAAAGTTTTTcgct                                                                                            >  1:705548‑M2/95‑149 (MQ=255)
                                                    tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgct                                                                                            >  1:482107‑M2/95‑149 (MQ=255)
                                                      gtcactccacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCt                                                                                                              >  2:399979‑M2/93‑129 (MQ=255)
                                                      gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCt                                                                                                              <  1:399979‑M2/37‑1 (MQ=255)
                                                          ctacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                                                                      <  2:117171‑M2/61‑1 (MQ=255)
                                                                  acatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAgcaagcaa                                                                              >  1:632727‑M2/81‑149 (MQ=255)
                                                                          cggagggaggctgctattttcaataattcgggatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                                      <  2:836772‑M2/77‑1 (MQ=255)
                                                                                 gggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaat                                                               >  2:222016‑M2/66‑149 (MQ=255)
                                                                                           tttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCa                                                                                                                                          <  1:14300‑M2/9‑1 (MQ=255)
                                                                                           tttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCa                                                                                                                                          >  2:14300‑M2/56‑64 (MQ=255)
                                                                                              caataatgcgtgatgtatatcacaaaaaaaactcaattaattaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa                                                  <  1:137851‑M2/97‑1 (MQ=255)
                                                                                               aataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt                                                 >  1:392338‑M2/52‑149 (MQ=255)
                                                                                                   atgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGGTGTTg                                             >  1:599557‑M2/48‑149 (MQ=255)
                                                                                                       gtgatgcagatcacacaaaacactcaattacttaacataaatgTATAATTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGca                                         <  1:700287‑M2/106‑1 (MQ=255)
                                                                                                         gatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                       <  1:222016‑M2/108‑1 (MQ=255)
                                                                                                                atcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa                                                             >  1:820134‑M2/35‑120 (MQ=255)
                                                                                                                atcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa                                                             <  2:820134‑M2/86‑1 (MQ=255)
                                                                                                                   acacaaaatacttcattacgtaacataaatgTATAAGTCATACGTGTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTGCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAGCGAAATGGGATGTTGCGCACAGTCAAAATaa                             <  2:170844‑M2/118‑1 (MQ=255)
                                                                                                                     acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAATTTTTCGATACGCTAATAAGCAAAAATCATACAGGAATAATCGAAATGGGAGGTTGCGCACAGTCAAAGTAACt                           >  2:428804‑M2/30‑149 (MQ=255)
                                                                                                                        aaacacgcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAc                        <  1:113803‑M2/123‑1 (MQ=255)
                                                                                                                         aacacttaattatttaacataaatgTATTAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTGACAAGTTTTTCGCTACGCTAGCAAGCAAAAATGATACAGGAATAGTCGAAATGGGATGTTGGGCACATTCAAAATAACTCAcc                       <  2:168358‑M2/124‑1 (MQ=255)
                                                                                                                             ctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTCGCGCACAGTCAAAATAACTCACCGTaa                   <  2:632727‑M2/128‑1 (MQ=255)
                                                                                                                              tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaaa                  >  2:223260‑M2/21‑149 (MQ=255)
                                                                                                                                aattacttaacataaatgTATAAGTCATACTTTTGTGTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTACCCGTAaata                >  1:386742‑M2/19‑149 (MQ=255)
                                                                                                                                       taacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCt         >  1:222424‑M2/12‑149 (MQ=255)
                                                                                                                                        aacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTg        >  2:781947‑M2/11‑149 (MQ=255)
                                                                                                                                              aatgTAGAAGTCATACTTTTGTTTTGGGTGTAGTTTTAGCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGctatac  <  2:177029‑M2/145‑2 (MQ=255)
                                                                                                                                                  |                                                                                                                                                
TGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAA  >  NC_000913_3_hsa_tpiA/1979133‑1979423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.