New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	3652634 =	NA (NA)	4 (0.090) +AAGCTGCAGAAGCGGCTAAACAGGCTTA	4/240	6.9	NA	coding (565/1017 nt)	insH1	IS5 transposase and trans‑activator
	?	NC_000913_3_hsa_tpiA	= 4110740	NA (NA)					intergenic (+55/+857)	cdh/yiiQ	CDP‑diacylglycerol phosphotidylhydrolase/DUF1454 family putative periplasmic protein
Rejected: Coverage evenness skew score above cutoff.

AAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_hsa_tpiA/3652697‑3652634 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTCTGACAGGTGCCGGATTTCATATCCGGCACTTACTTTCCTTAACTCTTCGCCTTAACGCAAAATCTCACACTGATGATCCTGAATTTCCTCGGCTGAAGCACGGTTAAGCGTCAGTAGATTTCGTTGTGTCG  <  NC_000913_3_hsa_tpiA/4110740‑4110606                                                                 ||||||||||||||||||||||||||||                                                                                                                                        AAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTTGGCAAAGCTGCAGAAGCGGCTAAACAGGCTTAAGTCTGACAGGTGCCGGATTTCATATCCGGCACTTACTTTCCTTAACTCTTCGCCTTA                                                                               >  3:315678/1‑150                GATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTTGGCAAAGCTGCAGAAGCGGCTAAACAGGCTTAAGTCTGACAGGTGCCGGATTTCATATCCGGCACTTACTTTCCTTAACTCTTCGCCTTAACGCAAAATCTCACA                                                                <  4:315678/150‑1                                                           tcgttAAAGCTGCAGAAGCGGCTAAACAGGCTTAAGTCTGACAGGTGCCGGATTTCATATCCGGCACTTACTTTCCTTAACTCTTCGCCTTAACGCAAAATCTCACACTGATGATCCTGAATTTCCTCGGCTGAAGCACGGTTAAGCGTC                     <  3:220734/145‑1                                                            cgttAAAGCTGCAGAAGCGGCTAAACAGGCTTAAGTCTGACAGGTGCCGGATTTCATATCCGGCACTTACTTTCCTTAACTCTTCGCCTTAACGCAAAATCTCACACTGATGATCCTGAATTTCCTCGGCTGAAGCACGGTTAAGCGTCA                    <  1:501908/146‑1                                                                          AAGCGGCTAAACAGGCTTAAGTCTGACAGGTGCCGGATTTCATATCCGGCACTTACTTTCCTTAACTCTTCGCCTTAACGCAAAATCTCACACTGATGATCCTGAATTTCCTCGGCTGAAGCACGGTTAAGCGTCAGTAGATTTCGTTGT      <  2:134856/150‑1                                                                          AAGCGGCTAAACAGGCTTAAGTCTGACAGGTGCCGGATTTCATATCCGGCACTTACTTTCCTTAACTCTTCGCCTTAACGCAAAATCTCACACTGATGATCCTGAATTTCCTCGGCTGAAGCACGGTTAAGCGTCAGTAGATTTCGTTGT      <  2:135220/150‑1                                                                              GGCTAAACAGGCTTAAGTCTGACAGGTGCCGGATTTCATATCCGGCACTTACTTTCCTTAACTCTTCGCCTTAACGCAAAATCTCACACTGATGATCCTGAATTTCCTCGGCTGAAGCACGGTTAAGCGTCAGTAGATTTCGTTGTGTCG  >  2:447967/1‑150                                                                 ||||||||||||||||||||||||||||                                                                                                                                        AAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_hsa_tpiA/3652697‑3652634 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTCTGACAGGTGCCGGATTTCATATCCGGCACTTACTTTCCTTAACTCTTCGCCTTAACGCAAAATCTCACACTGATGATCCTGAATTTCCTCGGCTGAAGCACGGTTAAGCGTCAGTAGATTTCGTTGTGTCG  <  NC_000913_3_hsa_tpiA/4110740‑4110606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.