mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 37.4% | 93.1 / 92.4 | 99 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_hsa_tpiA | 3,156,591 | 0 | T | G | 20.6% | 116.5 / 34.4 | 68 | intergenic (+73/‑32) | yqhD/dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| Marginal new junction evidence (lowest skew 10 of 38 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 1207790 = | 61 (0.950) | 11 (0.190) | 10/248 | 5.5 | 16.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | 1209619 = | 54 (0.960) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1097372 = | NA (NA) | 11 (0.180) | 11/274 | 5.7 | 26.0% | intergenic (+543/+193) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | 1097531 = | 32 (0.500) | intergenic (+702/+34) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1207805 | 56 (0.880) | 9 (0.160) | 9/248 | 5.9 | 14.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | = 1209602 | 54 (0.960) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1097172 = | NA (NA) | 10 (0.160) | 10/274 | 6.1 | 15.7% | intergenic (+343/+393) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | 1097188 = | 55 (0.860) | intergenic (+359/+377) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1096988 = | 64 (1.000) | 10 (0.160) | 10/274 | 6.1 | 13.8% | intergenic (+159/+577) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | 1097191 = | NA (NA) | intergenic (+362/+374) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1097007 = | 56 (0.880) | 10 (0.160) | 9/274 | 6.5 | 18.7% | intergenic (+178/+558) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | 1097534 = | 32 (0.510) | intergenic (+705/+31) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1097007 = | 56 (0.880) | 10 (0.160) | 9/274 | 6.5 | 15.4% | intergenic (+178/+558) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | 1097172 = | NA (NA) | intergenic (+343/+393) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 228108 | NA (NA) | 10 (0.160) | 9/272 | 6.5 | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3946053 | 4 (0.060) | 9 (0.150) | 8/272 | 6.9 | 69.8% | noncoding (2350/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_hsa_tpiA | = 3946069 | NA (NA) | noncoding (2366/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1096988 = | 64 (1.000) | 9 (0.140) | 8/274 | 6.9 | 13.3% | intergenic (+159/+577) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | 1097010 = | 55 (0.880) | intergenic (+181/+555) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||