mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 225,465 | 0 | A | . | 55.6% | ‑5.5 / 21.3 | 11 | intergenic (+8/‑35) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| * | NC_000913_3_hsa_tpiA | 225,467 | 1 | . | T | 45.5% | 6.3 / 20.8 | 11 | intergenic (+10/‑33) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 30.8% | 175.8 / 95.7 | 120 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_hsa_tpiA | 3,657,603 | 0 | T | A | 22.2% | 228.1 / 68.3 | 99 | intergenic (+36/+383) | hdeD/arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| * | NC_000913_3_hsa_tpiA | 3,657,599 | 0 | T | A | 22.0% | 230.9 / 68.7 | 100 | intergenic (+32/+387) | hdeD/arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| * | NC_000913_3_hsa_tpiA | 3,657,601 | 0 | G | C | 22.0% | 240.7 / 70.1 | 100 | intergenic (+34/+385) | hdeD/arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| * | NC_000913_3_hsa_tpiA | 1,864,768 | 0 | T | C | 20.8% | 222.0 / 54.3 | 106 | intergenic (+34/+14) | yeaD/yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| * | NC_000913_3_hsa_tpiA | 1,864,758 | 0 | G | A | 20.4% | 202.3 / 49.1 | 98 | intergenic (+24/+24) | yeaD/yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| Marginal new junction evidence (lowest skew 10 of 1003 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 1096961 = | 96 (1.140) | 17 (0.320) +47 bp |
13/160 | 4.7 | 22.0% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | 1097243 = | NA (NA) | intergenic (+414/+322) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1096961 = | 96 (1.140) | 17 (0.320) +47 bp |
13/160 | 4.7 | 26.0% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | 1097062 = | 58 (0.690) | intergenic (+233/+503) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1097463 | 15 (0.180) | 30 (0.380) | 21/238 | 5.1 | 71.4% | intergenic (+634/+102) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | = 1097467 | 10 (0.130) | intergenic (+638/+98) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1097294 | 59 (0.700) | 30 (0.380) | 21/238 | 5.1 | 46.4% | intergenic (+465/+271) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | = 1097455 | 14 (0.180) | intergenic (+626/+110) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1097113 | 65 (0.770) | 30 (0.380) | 21/238 | 5.1 | 44.5% | intergenic (+284/+452) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | = 1097455 | 14 (0.180) | intergenic (+626/+110) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 225281 | NA (NA) | 26 (0.320) | 22/244 | 5.1 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2068389 = | 87 (1.040) | 21 (0.290) | 18/218 | 5.3 | 24.8% | pseudogene (31/159 nt) | yoeH | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related |
| ? | NC_000913_3_hsa_tpiA | 2068430 = | 53 (0.740) | intergenic (‑11/‑205) | yoeH/yoeA | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/CP4‑44 prophage; putative disrupted hemin or colicin receptor;Phage or Prophage Related; interrupted by IS2 and C‑terminal deletion | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1097282 | 42 (0.500) | 25 (0.320) | 20/238 | 5.4 | 50.3% | intergenic (+453/+283) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | = 1097467 | 10 (0.130) | intergenic (+638/+98) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1097282 | 42 (0.500) | 25 (0.320) | 20/238 | 5.4 | 37.8% | intergenic (+453/+283) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | = 1097286 | 43 (0.550) | intergenic (+457/+279) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1097113 | 65 (0.770) | 25 (0.320) | 20/238 | 5.4 | 35.2% | intergenic (+284/+452) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | = 1097274 | 31 (0.390) | intergenic (+445/+291) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||