New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 4542672	26 (0.710)	3 (0.090)	3/256	NT	10.5%	intergenic (+57/‑425)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
	?	NC_000913_3_hsa_tpiA	= 4542968	27 (0.790)					intergenic (+353/‑129)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)

TTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTT  >  NC_000913_3_hsa_tpiA/4542528‑4542820                                                                                                                                                 |                                                                                                                                                     ttATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCAAAACt                                                                                                                                                  >  1:671461/1‑149 (MQ=255)    taCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAATTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc                                                                                                                                               <  1:620485/149‑1 (MQ=255)             tAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGAAAATAAGGGCCAAACTGTCCAAATCata                                                                                                                                      >  2:545071/1‑149 (MQ=255)                    gctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAACAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAACAACGCATAAATACAAGACATTTCGGGACAAACTGTCCATATCATAACTAAGt                                                                                                                               >  2:367402/1‑149 (MQ=255)                     ctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGATGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAAAAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGtt                                                                                                                              >  2:79967/1‑149 (MQ=255)                           ttGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAt                                                                                                                        >  1:114398/1‑149 (MQ=255)                             gCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttt                                                                                                                      <  1:474362/149‑1 (MQ=255)                               cGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGCTAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGTGGCCAAACTGTCCATATCATAAATAAGTTACGTAttttt                                                                                                                    >  1:496186/1‑149 (MQ=255)                                 gATTATGGGAAAGAAATAATCTCATATACGAAGAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATAATAAATAAGTTACGTATTTTTtc                                                                                                                  >  2:254593/1‑149 (MQ=255)                                       gggAAAGAAATAATATCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAATACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcag                                                                                                            <  2:425025‑M1/149‑43 (MQ=255)                                              aaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa                                                                                                     >  1:202939/1‑149 (MQ=255)                                                               aaaaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc                                                                                                                                              >  2:97931/1‑91 (MQ=255)                                                               aaaaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc                                                                                                                                              <  1:97931/91‑1 (MQ=255)                                                                           gagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatcttta                                                                        <  1:635450‑M1/149‑79 (MQ=255)                                                                               agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGttt                                                                    <  1:216178/149‑1 (MQ=255)                                                                                 agGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAACCATCTAACTCTTTGa                                                                  >  2:300671/1‑149 (MQ=255)                                                                                   gTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGata                                                                <  1:534285/149‑1 (MQ=255)                                                                                    tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgattcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagat                                                               <  1:607712‑M1/149‑88 (MQ=255)                                                                                               ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTTCACAGTATTGACAGTAAAAAACGACAAAAAGCAGCTAACTGTTTGATATGTAAATTAttt                                                    >  1:367760/1‑149 (MQ=255)                                                                                                     ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTACCTGTTTGATAGGTAAATGATTTCTATTg                                              >  1:264875/1‑149 (MQ=255)                                                                                                       aataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTa                                            >  1:357647/1‑149 (MQ=255)                                                                                                       aataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTa                                            >  2:533081/1‑149 (MQ=255)                                                                                                       aataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTATATTGTa                                            >  2:534407/1‑149 (MQ=255)                                                                                                                        aaataaatACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCAc                           >  1:279886/1‑149 (MQ=255)                                                                                                                               taCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTTTTTTTTTTTTTTTTATTAAAAAACGACAAAAAGCATCTAACTTTTTGATATGTAAATTATTTCTATTGTTCTTTAATTTCACATCACCTCCGCt                    >  2:400230/1‑149 (MQ=255)                                                                                                                                 gtaGACTATTTGGGACAAATTGTAAATATTATAATGATATTACGTAATTTTTCTAAAGCATAAAAATATTTAAAAACGACAAAAAGTATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCtat                  <  2:41322/147‑1 (MQ=255)                                                                                                                                   gcaacaTTGGACCCACACTTGCCATATCATAAGTAATCTACTGATTTTTGCTCAACGATAAAAACACTAAAAAACGACAAAAAGCGTCTACCTGTTTGATATTTAAAGTATTTCTACTGTAAATCAATTTCACATCACCTCCGCTatat                <  2:190624/144‑1 (MQ=255)                                                                                                                                   aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCTCATCACCACCGCCatat                >  2:284139/1‑149 (MQ=255)                                                                                                                                    aacatttGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATg               >  1:313221/6‑149 (MQ=255)                                                                                                                                          tGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCACACCGGCGAGTATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGc         <  1:543320/149‑1 (MQ=255)                                                                                                                                              gCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAAc     >  2:447502/1‑149 (MQ=255)                                                                                                                                                 attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatcttctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaagaatgaggaagatgcgtcgagccacaga  >  1:581170‑M1/1‑1 (MQ=255)                                                                                                                                                 aaaCTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGtt  >  1:150541/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                     TTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTT  >  NC_000913_3_hsa_tpiA/4542528‑4542820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.