New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	3827430 =	19 (0.800)	4 (0.180)	4/270	2.7	17.0%	intergenic (+139/+30)	recG/gltS	ATP‑dependent DNA helicase/glutamate transporter
	?	NC_000913_3_hsa_tpiA	3827452 =	21 (0.930)					intergenic (+161/+8)	recG/gltS	ATP‑dependent DNA helicase/glutamate transporter
Rejected: Frequency below/above cutoff threshold.

TGAAGCGGCGGTAGAAGTGCCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_hsa_tpiA/3827455‑3827430 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccgcTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCATGTGCGACGGGCCAAAGC  >  NC_000913_3_hsa_tpiA/3827452‑3827578                                                                                                                                                           TGAAGCGGCGGTAGAAGTGCCGCCGCTTCATCGGTTAACCGGCAAGAATCGGCAACACCAAATACAACATAATGACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACACCAAGGGCGGCGGCCCA      >  2:239930/1‑149   AAGCGGCGGTAGAAGTGCCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAAT                                                                                  >  1:220011/1‑71   AAGCGGCGGTAGAAGTGCCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAAT                                                                                  <  2:220011/71‑1     GCGGCGGTAGAAGTGCCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCATGTACGACGGGCCAAAGC  >  2:340204/1‑149                                                                                                                                                           TGAAGCGGCGGTAGAAGTGCCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_hsa_tpiA/3827455‑3827430 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccgcTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCATGTGCGACGGGCCAAAGC  >  NC_000913_3_hsa_tpiA/3827452‑3827578

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.