New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 4557460	27 (1.140)	4 (0.180)	4/262	2.6	14.3%	coding (812/912 nt)	hypT	hypochlorite‑responsive transcription factor
	?	NC_000913_3_hsa_tpiA	= 4557471	23 (1.050)					coding (801/912 nt)	hypT	hypochlorite‑responsive transcription factor
Rejected: Frequency below/above cutoff threshold.

TCTGGTCTGGGATAATGGCGGTTGGCGCAGTGCGACGCTGGAGAATGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTAAAAGCTCGCTCATCGAAGAGACAAAAAAGGTGCTG  >  NC_000913_3_hsa_tpiA/4557313‑4557606                                                                                                                                                    |                                                                                                                                                   tctggtctggGATAATGGCGGTTGGCGCAGTGCGACGCTGGAGAATGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGAt                                                                                                                                                   <  2:73603/149‑1 (MQ=255)   tggtctggGATAATGGCGGTTGGCGCAGTGCGACGCTGGAGAATGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCa                                                                                                                                                 >  2:81196/1‑149 (MQ=255)      tctggGATAATGGCGGTTGGCGCAGTGCGACGCTGGAGAATGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGCTCACCa                                                                                                                                              >  1:285375/1‑149 (MQ=255)      tctggGATAATGGCGGTTGGCGCAGTGCGACGCTGGAGAATGTCAGCTAAGCACAATCTACAGCTCGCGCAGTTCACGCCAGGCGCGTTCGGCCACGGGATTCATGCAGGTAATCATCCGGTATGCATAGGCCGGAATCGCGATCACCa                                                                                                                                              >  1:68941/1‑149 (MQ=255)        tggGATAATGGCGGTTGGCGCAGTGCGACGCTGGAGAATGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGt                                                                                                                                            <  2:4428/149‑1 (MQ=255)          ggATAATGGCGGTTGGCGCAGTGCGACGCTGGAGAATGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTc                                                                                                                                          >  2:83824/1‑149 (MQ=255)                           gcAGTGCGACGCTGGAGAATGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGGCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACaa                                                                                                                         >  1:291248/1‑149 (MQ=255)                                         gagaAGGTCAGCTAGGCACAATCTCCGGCTCGCGCAGTTCACGGCAGAAGCGTTCGGTAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTg                                                                                                           <  2:11414/149‑1 (MQ=255)                                                      aaGCACAATCTGCCGCTGGCGCAGTTCACGCCAGAATCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCAGAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCttgtt                                                                                              <  2:224512/149‑1 (MQ=255)                                                         cacaATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTggc                                                                                           >  2:306184/1‑148 (MQ=255)                                                         cacaATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGAATCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGa                                                                                           >  2:69039/1‑149 (MQ=255)                                                            aaTCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGAGTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTGCTGGTGGATgg                                                                                        >  1:159614/1‑149 (MQ=255)                                                                    gcgcgcgCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACTAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTcc                                                                                <  2:346957/146‑1 (MQ=255)                                                                        gcgcAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGAcgaactggtgatcccgattca                                                                                                                               <  2:91507‑M1/98‑22 (MQ=255)                                                                        gcgcAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGAcgaactggtgatcccgattca                                                                                                                               >  1:91507‑M1/1‑77 (MQ=255)                                                                             gTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGGTCACCAGTTCGTCCCGTTTCAGTACAACGAGCTTCCCGCTGCGAGTTTCTTGTTGGATGGCGTACTCCGGCAGCCAg                                                                       <  2:121358/149‑1 (MQ=255)                                                                             gTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAg                                                                       <  2:121350/149‑1 (MQ=255)                                                                                        aaGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCcaca                                                            <  1:83824/149‑1 (MQ=255)                                                                                            gTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGAcgaactggtgatcccgattcag                                                                                                                              <  2:193075‑M1/79‑23 (MQ=255)                                                                                            gTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGAcgaactggtgatcccgattcag                                                                                                                              >  1:193075‑M1/1‑57 (MQ=255)                                                                                                ggCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGACTTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGa                                                    <  1:123194/149‑1 (MQ=255)                                                                                                 gCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAg                                                   <  1:81196/149‑1 (MQ=255)                                                                                                   aaCGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGCggg                                                 >  2:294968/1‑149 (MQ=255)                                                                                                   aaCGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAggg                                                 >  2:219923/1‑149 (MQ=255)                                                                                                     cGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCa                                               >  2:213596/1‑149 (MQ=255)                                                                                                             aTGCGGGTACTCCTCCGGTATGCATCGGCCTGAACCGGGATCACCAGTTCGTCCCGATTCAGTAACACGAGCTTCCCGCTGCGAATGTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCtt                                       <  1:412697/149‑1 (MQ=255)                                                                                                                  ggTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTaaaa                                  <  2:291248/149‑1 (MQ=255)                                                                                                                                          cTGAATCGGGATCACCAGTTCGtcccgattcaggcctatgcataccggatgaatacccgcatgaatcccgttgccgaac                                                                                <  2:193075‑M2/79‑58 (MQ=255)                                                                                                                                          cTGAATCGGGATCACCAGTTCGtcccgattcaggcctatgcataccggatgaatacccgcatgaatcccgttgccgaac                                                                                >  1:193075‑M2/1‑22 (MQ=255)                                                                                                                                          cTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGTTAGCTTACTCCGGCAGCCAGGCAATCCAACAGCCGTCGAGAGCAACATGCTTGCAAAGCTAGCTCATCGTAGAGACaaaaa          >  1:183726/1‑149 (MQ=255)                                                                                                                                          cTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTAAAAGCTCGCTCATCGAAGAGAcaacaa          >  2:67146/1‑149 (MQ=255)                                                                                                                                          cTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTAAAAGCTCGCTCATCGAAGAGACaaaaa          >  1:190276/1‑149 (MQ=255)                                                                                                                                           tGAATCGGGATCACCAGTTCGtcccgattcaggcctatgcataccggatgaatacccgcatgaatcccgttgccgaacgcttctggcgtgaactgcgc                                                            >  1:91507‑M2/1‑21 (MQ=255)                                                                                                                                           tGAATCGGGATCACCAGTTCGtcccgattcaggcctatgcataccggatgaatacccgcatgaatcccgttgccgaacgcttctggcgtgaactgcgc                                                            <  2:91507‑M2/98‑78 (MQ=255)                                                                                                                                                  ggATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCATCCTGCTTTAAAAGCTCGCTCATCGAAGAGACAAAAAAGGTGCTg  >  2:312381/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   TCTGGTCTGGGATAATGGCGGTTGGCGCAGTGCGACGCTGGAGAATGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTAAAAGCTCGCTCATCGAAGAGACAAAAAAGGTGCTG  >  NC_000913_3_hsa_tpiA/4557313‑4557606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.