| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 3234647 | 20 (0.840) | 3 (0.140) | 3/256 | 3.0 | 10.7% | noncoding (10/86 nt) | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_hsa_tpiA | 4325943 = | 32 (1.500) | noncoding (160/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCCAGATTGGCAACGGATGAATTTATCTGTGTGACGGAAGAATAAACGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCG > NC_000913_3_hsa_tpiA/3234502‑3234794 | gCCAGATTGGCAACGGATGAATTTATCTGTGTGACGGAAGAATAAACGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACg < 2:352220/149‑1 (MQ=255) atctGGCAACGGATGAATTTATCTGTGTGACGGAAGAATAAACGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTg > 2:413913/4‑149 (MQ=255) atctGGCAACGGATGAATTTATCTGTGTGACGGAAGAATAAACGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTg > 2:207262/4‑149 (MQ=255) ccTGTGTCACGCAGAAATGAACGGAGAGAAACGCTAAACAACTCAATTCAGACGATGTGGACTGGGATTCTTTGTTTTTTGGATGCGCGCTTCCAGAACGGGGCAGACAGTGCCGTATGCGACGCTTGCCGCGTCTTATCCGGCCTGGa < 2:308464/148‑1 (MQ=255) tgtgACGGAAGAATAAACGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCCGGCGTaa > 2:265912/1‑149 (MQ=255) gaagaaTAAACGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTg > 2:304690/1‑149 (MQ=255) aCGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGc < 2:279943/149‑1 (MQ=255) aaCGCTAAACAAGAGAATGGAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAgg < 2:183185/149‑1 (MQ=255) aCGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGc < 1:304690/149‑1 (MQ=255) aCAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcg > 1:176987/1‑149 (MQ=255) tAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCATATTTTTCCGCATGCGACGCTGGCCGTGTCTTATTCGGCCTGTAGGATGTTGCTGGAAGTAGGCCGGATAAGGCGTTTACGCCGAATGCGGc > 2:49409/1‑149 (MQ=255) gACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAg > 1:176877/1‑149 (MQ=255) cAGGGATTTTTTTTTTTATTTTCGCGCGATTCCAGAACTGGGCAAACATTGCCAGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGTACTTATGCCTGTTAAAGCGCTTACGCCTCATCCGCCTGGTACCTCCCac > 2:80698/1‑148 (MQ=255) cAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCaa < 1:413913/149‑1 (MQ=255) cAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCaa < 1:207262/149‑1 (MQ=255) aGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGgcgtaaacgccttatccg < 2:18762‑M1/77‑19 (MQ=255) aGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGgcgtaaacgccttatccg > 1:18762‑M1/1‑59 (MQ=255) tttttGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTAcc < 2:373120/149‑1 (MQ=255) gcgcGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCtt > 2:146965/1‑149 (MQ=255) gcgcGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCtt > 2:355657/1‑149 (MQ=255) tGGGCTGACCTTGCCGGATGAGACGTTTGCCGGCTCTTATCAGGACTGGAGTAACGTGATGAACGTAGGCCGGATAAGGGGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTAc < 1:193264/149‑1 (MQ=255) ggCAGACATTGGCCGATGCGACGCTTGCCGAGTTTTAGCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTCCCGACGACGTCCCATCTTCACCCCGTGCACTAccg < 2:297443/149‑2 (MQ=37) aCATTGCCGGATGCGgcgtaaacgccttatccggcttacggagggtgcgggaatttgtaggcctgataagacgcgcaagcgtcgcatcaggcagtcggcaccgttgccggatgcggcgtaaacgccttatccggcctacggatggtgcg < 1:366184‑M1/149‑135 (MQ=255) gCCGGATGCGgcgtaaacgccttatccggcctacggagggtgcgggaatttgtaggcctgataagacgcgcaagcgtcgcatcaggcag > 2:44189‑M1/1‑10 (MQ=255) gATGCGgcgtaaacgccttatccggcctacggagggtgcgggaatttgtaggcctgataa > 1:223307‑M1/1‑6 (MQ=255) gATGCGgcgtaaacgccttatccggcctacggagggtgcgggaatttgtaggcctgataa < 2:223307‑M1/60‑55 (MQ=255) aTGCGgcgtaaacgccttacccggcctacggagggtgcgggaatttgtaggcctgataagacgcgcaagcgtcgcatcaggcagtcggcaccgttgccggatgcggcgtaaacgccttatccggcctacggatggtgcgggaatttgta < 1:40200‑M1/149‑145 (MQ=255) tGCGgcgtaaacgccttatccggcctacggagggtgcgggaatttgtaggcctgataagacgcgcaagcgtcgcatcaggcagtcggcaccgttgccggatgcggcgtaaacgccttatccggcctaccgatggcgcgggaatctgtag > 2:148351‑M1/1‑4 (MQ=255) cggcgtaaacgccttatccggcctacggagggtgcgggaatttgtaggcctgataagacgcgcaagcgtcgcatcaggcagtcggcaccgttgccggatgcggcgtaaacgccttatccggcctacggatggtgcgggaatttgtaggc < 2:270212‑M1/149‑148 (MQ=255) ggcgtaaacgccttatccggcctacggagggtgcgggaatt < 1:249208‑M1/41‑41 (MQ=255) ggcgtaaacgccttatccggcctacggagggtgcgggaatt > 2:249208‑M1/1‑1 (MQ=255) | GCCAGATTGGCAACGGATGAATTTATCTGTGTGACGGAAGAATAAACGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCG > NC_000913_3_hsa_tpiA/3234502‑3234794 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |