New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 441421518 (0.760)3 (0.130) 3/268 3.1 14.3% intergenic (+42/‑42) yjfC/aidB ATP‑Grasp family ATPase/DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase
?NC_000913_3_hsa_tpiA = 4414231 19 (0.850)intergenic (+58/‑26) yjfC/aidB ATP‑Grasp family ATPase/DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATGAAGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCAACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGGTAACGCGTGAAGGTGCTGGCTGGGATAG  >  NC_000913_3_hsa_tpiA/4414084‑4414375
                                                                                                                                                   |                                                                                                                                                
gatgaAGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGa                                                                                                                                                 <  1:375153/149‑1 (MQ=255)
 atgaAGCGTGCGGAAGGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGAc                                                                                                                                                <  1:276041/149‑1 (MQ=255)
               aTGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTCACCATTAGTATGGTCACTGCCATGGAttcat                                                                                                                                  <  2:12592/149‑5 (MQ=38)
                tGGTGATCCGTGAACATAACCCACTGTTCACCACAGACACCTCCCGTTTCGTTCCGCATTACATTGCTGTATAAGAATGTTTTTGCAATCTCTTTCTGTCAGGATGCCATGGCAGTGACCATACTGATGGTGACTGCCATTGATggagg                                                                                                                                 <  2:413324/149‑1 (MQ=255)
                tGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATggagg                                                                                                                                 <  2:401875/149‑1 (MQ=255)
                   ggATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATggagggag                                                                                                                              <  1:281543/149‑1 (MQ=255)
                         gTGAAGATAACACACTGATGACCAAAGACACCTCACGCTTCGTGCGGTATTACAAAGCTCATTTAGATTGTTTTATCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGGCATTGATGGGGGGAGACACAg                                                                                                                        >  2:299479/1‑149 (MQ=255)
                                          aTCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGGCTGCCATGTATGGATGGAGACACAGTGCACTGGCAAACTcac                                                                                                       >  1:325903/1‑149 (MQ=255)
                                                      acCTGACGTTTCGTTCCGCATTACATTGCTGGGTAAGTATATTATCGCCATTACTTTTTTTCATGAATCCATGGCAGTGACCAGACGAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAAt                                                                                           <  2:402677/149‑1 (MQ=255)
                                                         tCACGTTTCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCag                                                                                        >  1:55651/1‑148 (MQ=255)
                                                               tttgTTCCGCGCTCCCTTGCTGGATAAGAATGTTTTAGCCATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCAACCtata                                                                                  <  1:193163/146‑1 (MQ=255)
                                                               ttCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCAACCtata                                                                                  <  1:252766/149‑1 (MQ=255)
                                                                                     gATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCAACCTATACCATTAAATAACAGCAACTtat                                                            <  1:109114/149‑1 (MQ=255)
                                                                                      aTAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCAACCTATACCATTAAATAACAGCAAc                                                                >  2:45835/1‑144 (MQ=255)
                                                                                      aTAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCAACCTATACCATTAAATAACAGCAAc                                                                <  1:45835/144‑1 (MQ=255)
                                                                                                         ctctTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCAACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGctc                                        >  2:323027/1‑149 (MQ=255)
                                                                                                            tttCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCAACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGc                                     >  1:255203/1‑149 (MQ=255)
                                                                                                                   cATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTGGTAATCAACCTAAACCATTAACTAACAGCAACTTATACCTGTCTGATGGCGCGCCCTGCGagccgg                              >  2:105486/1‑144 (MQ=255)
                                                                                                                                       cATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCAACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGGTAACGCGTGAAGGTgctggc          >  1:17357/1‑149 (MQ=255)
                                                                                                                                            tAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCAACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGGTAACGCGTGAAGGTGCTGGCTGGGa     <  1:323027/149‑1 (MQ=255)
                                                                                                                                            tAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCAACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGGTAACGCGTGAAGGTGCTGGCTGGGa     >  1:207027/1‑149 (MQ=255)
                                                                                                                                               tGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCAACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGGTAACGCGTGAAGGTGCTGGCTGGGATAg  <  1:330991/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                
GATGAAGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCAACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGGTAACGCGTGAAGGTGCTGGCTGGGATAG  >  NC_000913_3_hsa_tpiA/4414084‑4414375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.