New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 2926462	23 (0.970)	4 (0.180)	4/270	2.7	15.1%	coding (155/1365 nt)	ygdH	UPF0717 family protein
	?	NC_000913_3_hsa_tpiA	= 2926466	23 (1.020)					coding (159/1365 nt)	ygdH	UPF0717 family protein
Rejected: Frequency below/above cutoff threshold.

ATTAGCCCGCTTGGCTCCATGGATATGTTGTCGCAGCTGGAAGTGGATATGCTTAAACGCACCGCCAGCAGCGACCTCTATCAACTGTTTCGCAACTGTTCACTTGCCGTACTGAACTCCGGTAGTTTGACCGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAATCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGT  >  NC_000913_3_hsa_tpiA/2926320‑2926606                                                                                                                                                   |                                                                                                                                             atTAGCCCGCTTGGCTCCATGGATATGTTGTCGCAGCTGGAAGTGGATATGCTTAAACGCACCGCCAGCAGCGACCTCTATCAACTGTTTCGCAACTGTTCACTTGCCGTACTGAACTCCGGTAGTTTGACCGATAACAGCAAAGAAtt                                                                                                                                            >  1:167727‑M2/1‑147 (MQ=255)      ctcgcTTGGCTCCATGGATATGTTGGCGCAGCTGGAGCTAAATATGTTTTAACGCACCGCCAGCAGCGCCCTCTATCAACTGTTTCGCAACGGTTCACTTGCCGTACTGAACTCCGGTAGTTTGACCGATAACAGCAAAGAAttgctgt                                                                                                                                       >  1:392308‑M2/3‑142 (MQ=255)      cccGCTTGGCTCCATGGATATGTTGTCGCAGCTGGAAGTGGATATGCTTAAACGCACCGCCAGCAGCGACCTCTATCAACTGTTTCGCAACTGTTCACTTGCCGTACTGAACTCCGGTAGTTTGACCGATAACAGCAAAGAAttgctgt                                                                                                                                       >  2:329884‑M2/1‑142 (MQ=255)       ccGCTTGGCTCCATGGATATGTTGTCGCAGCTGGAAGTGGATATGCTTAAACGCACCGCCAGCAGCGACCTCTATCAACTGTTTCGCAACTGTTCACTTGCCGTACTGAACTCCGGTAGTTTGACCGATAACAGCAAAGAATTGCTGtc                                                                                                                                      <  2:267148/149‑1 (MQ=255)       ccGCTTGGCTCCATGGATATGTTGTCGCAGCTGGAAGTGGATATGCTTAAACGCACCGCCAGCAGCGACCTCTATCAACTGTTTCGCAACTGTTCACTTGCCGTACTGAACTCCGGTAGTTTGACCGATAACAGCAAAGAATTGCTGtc                                                                                                                                      >  1:249390/1‑149 (MQ=255)            tGGCTCCATGGATATGTTGTCGCAGCTGGAAGTGGATATGCTTAAACGCACCGCCAGCAGCGACCTCTATCAACTGTTTCGCAACTGTTCACTTGCCGTACTGAACTCCGGTAGTTTGACCGATAACAGCAAAGAATTGCTGTCTCGtt                                                                                                                                 <  2:124836/149‑1 (MQ=255)                        tctgttgtCGCAGCTGGAACTGGATCTGCTGAAACGCCTCCCCAGCAGCGGCCTCTATCAACTGTTTCGCAACTGTTCACTTGCCGTACTGAACTCCGGTAGTTTGACCGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCg                                                                                                                     <  1:183238/147‑1 (MQ=255)                         atGTTGTCGCAGCTGGAAGTGGATATGCTTAAACGCACCGCCAGCAGCGACCTCTATCAACTGTTTCGCAACTGTTCACTTGCCGTACTGAACTCCGGTAGTTTGACCGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGa                                                                                                                    <  1:415980/149‑1 (MQ=255)                         atGGTGTCGCAGCTGGAAGTGGATCTGCCTAAACGCACCGCCAGCAGCGACCTTTATCAACTGTTTCGCAAGTGTTCACGTGCCGTACTGAACTCCGGTAGTTTGACCGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGa                                                                                                                    <  1:415953/149‑1 (MQ=255)                            ttgtCGCAGCTGGAAGTGGATATGCTTAAACGCACCGCCAGCAGCGACCTCTATCAACTGTTTCGCAACTGTTCACTTGCCGTACTGAACTCCGGTAGTTTGACCGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGatat                                                                                                                 >  2:350284/1‑149 (MQ=255)                                   aGCTGGAAGTGGATATGCTTAAACGCACCGCCAGCAGCGACCTCTATCAACTGTTTCGCAACTGTTCACTTGCCGTACTGAACTCCGGTAGTTTGACCGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTc                                                                                                          <  2:249390/149‑1 (MQ=255)                                                        aaCGCACCGCCAGCAGCGACCTCTATCAACTGTTTCGCAACTGTTCACTTGCCGTACTGATCTCGGGTGGTTTGTCCGTTAATAGCTAAGAATTGCTGTCTCGTTTTGTAAATTTCGATATTAACTTCTTGCGCTGTGATCGCGGCGTa                                                                                     >  1:194101/1‑149 (MQ=255)                                                           gCACCGCCGGCAGCGACCTCTATCAACTGTTTCGCAACTGTTCACTTGCCGTACTGAACTCCGGTAGTTTGACCGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAg                                                                                  <  1:371515/149‑1 (MQ=255)                                                                gCCAGCAGCGACCTCTATCAACTGTTTCGCAACTGTTCACTTGCCGTACTGAACTCCGGTAGTTTGACCGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGa                                                                             >  1:281558/1‑149 (MQ=255)                                                                gCCAGCAGCGACCTCTATCAACTGTTTCGCAAATGCTCACGTTCCGTACTGAACTCCGGTAGTTTGACCGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGa                                                                             >  1:414512/1‑149 (MQ=255)                                                                 ccAGCAGCGACTTCTATCAACTGTTTCGCAACTGTTCACTTGCCGTACTGAACTCCGGTAGTTGGACCGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGaa                                                                            <  1:210450/149‑1 (MQ=255)                                                                               tATCAACTTTTTCGCAACTGTTCACTTGCCGTACTGAACTCCGGTAGTTTGACCGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAATccccc                                                              <  1:261948/149‑1 (MQ=255)                                                                               tATCAACTGTTTCGCAACTGTTCACTTGCCGTACTGAACTCCGGTAGTTTGACCGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAATccccc                                                              >  2:373095/1‑149 (MQ=255)                                                                                       gTTTCGCAACTGTTCACTTGCCGGACTGAACTCCGGTAGTTTGACCGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGTACGCGGCGTAAAGCTGGAACTGATTAATCCCCCGGAAGAgg                                                      <  1:145948/149‑1 (MQ=255)                                                                                                  ggttaCTTTCCGTACTGGACTCCGGTAGGTTTAGCGGTTACAGGACGCAATTGCTGTCTCGTTTTGAATATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAATCTGTAACTTATTAATCCCCCGGAAGAGGCTTGTGTCGAt                                           <  2:665/145‑1 (MQ=255)                                                                                                    tCACTTGCCGTACTGAACTCCGGTAGTTTGACCGACAACAGCAAAGAATGGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAATCCCCCGGAAGAGGCTTTTGTCGATgg                                         <  1:221026/149‑1 (MQ=255)                                                                                                      aCTTGCCGTACTGAACTCCGGTAGTTTGACCGATAACAGCAAAGAATTGCTGTCTCGttt                                                                                                                                <  2:70111/60‑1 (MQ=255)                                                                                                      aCTTGCCGTACTGAACTCCGGTAGTTTGACCGATAACAGCAAAGAATTGCTGTCTCGttt                                                                                                                                >  1:70111/1‑60 (MQ=255)                                                                                                                   aaCTCCGGTAGTTTGACCGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAATCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCgcgc                          >  1:193534/1‑149 (MQ=255)                                                                                                                      tCCGGTAGTTTGACCGATAACAGCAAAGAAttgctgttatcggtcaaactaccggagttcagtacggcaagtgaacagttgcgaaacagttgatagaggtcgctgctggcggtgcgtttaag                                                  >  2:105642‑M2/1‑30 (MQ=255)                                                                                                                      tCCGGTAGTTTGACCGATAACAGCAAAGAAttgctgttatcggtcaaactaccggagttcagtacggcaagtgaacagttgcgaaacagttgatagaggtcgctgctggcggtgcgtttaag                                                  <  1:105642‑M2/122‑93 (MQ=255)                                                                                                                         ggTAGTTTGACCGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAATCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCTCGCTTTGCa                    >  1:142040/1‑149 (MQ=255)                                                                                                                                      aTAACAGCAAAGAAttgctgttatcggtcaaactaccggagttcagtacggcaagtgaacagttgcgaaacagttgatagaggtcgctgctggcggtgcgtttaagcatatccacttccagctgcgacaacatatcca                  >  2:319247‑M2/1‑14 (MQ=255)                                                                                                                                      aTAACAGCAAAGAAttgctgttatcggtcaaactaccggagttcagtacggcaagtgaacagttgcgaaacagttgatagaggtcgctgctggcggtgcgtttaagcatatccacttccagctgcgacaacatatcca                  <  1:319247‑M2/138‑125 (MQ=255)                                                                                                                                           aGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAATCCCCCGGAAGAGGCTTTTGTCGATGGGGGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGt  >  1:129292/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                             ATTAGCCCGCTTGGCTCCATGGATATGTTGTCGCAGCTGGAAGTGGATATGCTTAAACGCACCGCCAGCAGCGACCTCTATCAACTGTTTCGCAACTGTTCACTTGCCGTACTGAACTCCGGTAGTTTGACCGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAATCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGT  >  NC_000913_3_hsa_tpiA/2926320‑2926606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.