Predicted mutation
evidence seq id position mutation freq annotation gene description
JC NC_000913_3_hsa_tpiA 1,726,433 Δ11 bp 33.3% coding (411‑421/600 nt) nemR → transcriptional repressor for the nemRA‑gloA operon, quinone‑, glyoxal‑, and HOCl‑activated

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 172643216 (0.460)8 (0.230) 8/276 NT 33.3% coding (410/600 nt) nemR transcriptional repressor for the nemRA‑gloA operon, quinone‑, glyoxal‑, and HOCl‑activated
?NC_000913_3_hsa_tpiA 1726444 = 16 (0.460)coding (422/600 nt) nemR transcriptional repressor for the nemRA‑gloA operon, quinone‑, glyoxal‑, and HOCl‑activated

CCAGCAAACACTGAACCAGTTTTGCCAACATGGAACCATCAGTGGTTGCCTGACAGTAAAACTCTCTGCCGAAGTGTGCGATCTGTCAGAAGATATGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGC  >  NC_000913_3_hsa_tpiA/1726292‑1726579
                                                                                                                                            |                                                                                                                                                   
ccAGCAAACACTGAACCAGTTTTGCCAACATGGAACCATCAGTGGTTGCCTGACAGTAAAACTCTCTGCCGAAGTGTGCGATCTGTCAGAAGATATGCGCAGCGCGATGGATAAAGGTGCTCACGGCGTGATCGCCCTGCTCTCTCAgg                                                                                                                                             >  1:496300/1‑149 (MQ=255)
         acTGAACCAGTTTTGCCAACATGGAACCATCAGTGGTTGCCTGACAGTAAAACTCTCTGCCGAAGTGTGCGATCTGTCAGAAGATATGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTtggaaaatggccgtgag                                                                                                                                    >  1:553109‑M1/1‑132 (MQ=255)
                cAGTTTTGCCAACATTGAACCCTTAGTGGTTGCCTGACAGTAAAACTCTCTGCCGAAGTGTGCGATCTGTCAGAAGATATGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTtggaaaatggccgtgagaaccatt                                                                                                                             <  2:85759‑M1/149‑25 (MQ=255)
                             aTGGAACCATCAGTGGTTGCCTGACAGTAAAACTCTCTGCCGAAGTGTGCGATCTGTAAGAAGATATGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGACCCATGGt                                                                                                                >  2:42843/1‑149 (MQ=255)
                                     aTCAGTGGTTGCCTGACAGTAAAACTCTCTGCCGAAGTGTGCGATCTGTCAGAAGATATGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGACCCATTCTTTAACCtt                                                                                                        >  2:337791/1‑149 (MQ=255)
                                          tGGTTGCCTGACAGTAAAACTCTCTGCCGAAGTGTGCGATCTGTAAGAAGATATGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTtgtg                                                                                                   >  1:191840/1‑149 (MQ=255)
                                                      aGTAAAATTCTCTGCCGAAGTGTGCGATCTGTCAGAAGATATGCGGAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTCGCCCAGGCGCTGGAAAAGGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGc                                                                                       <  1:490658/149‑1 (MQ=255)
                                                      aGTAAAACTCTCTGCCGAAGTGTGCGATCTGTCAGAAGATATGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTtggaaaatggccgtgagaaccattgtttaaccttttgtggcgaaccgctgcaacaggcacaa                                                                                       >  1:636481‑M1/1‑87 (MQ=255)
                                                       gTAAAACTCTCTGCCGAAGTGTGCGATCTGTCAAAAGATATGCGGAGGGCGAGCGATAAAGGTGCTCGCGGCGTGATCGGCCTGCTCTCTCAGGCGGTGGAAAATGGCCTTGCGAACCCTTGTATAACCTTTTGCGGCCAACCATTGCa                                                                                      >  2:323031/1‑149 (MQ=255)
                                                        tAAAACTCTCTGCCGAAGTGTGCGATCTGTCAGAAGATATGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTtggaacatggccgtgagaaccattgtttaaccttttttggcgaacctctgcaacaggcacaggt                                                                                     >  1:448227‑M1/1‑85 (MQ=255)
                                                           aaCTCTCTGCCGAAGTGTGCGATCTGTCAGAAGATATGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCCGGCGACGGGAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAg                                                                                  <  1:517810/149‑1 (MQ=255)
                                                                tctGCCGAAGTGTGCGATCTGTCAGAAGATATGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGcaca                                                                             >  1:219105/1‑149 (MQ=255)
                                                                tctGCCGAAGTGTGCGAACTGTCAGAAGATATGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGcaca                                                                             >  1:162055/1‑149 (MQ=255)
                                                                   gCCGAAGTGTGCGATCTGTCAGAAGATATGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTtggaaaatggccgtgagaaccattgtttaaccttttgtggcgaaccgctgcaacaggcacaagtgctttacgcac                                                                          <  1:610621‑M1/149‑76 (MQ=255)
                                                                    ccGAAGTGTGCGATCTGTCAGAAGATATGCGCAGCGCGATGGATAAAGATGCTCGCGGCGTGAGCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACAGCTGCAGCAGGCACAAggg                                                                         >  1:580481/1‑147 (MQ=255)
                                                                                     tcattagaTATTCGCAGCGCGATGGATAAAGGTGCGCGCAGCGTGGTCGCCCTGCTCTCGCAGGCGCTGGAAAATGGCCGTGGGAACCATTGTTTAACCTTCAGTAGCCAACCGCGGCAACAGGCACAAGTGCTTTACGCCCTGTGGCt                                                        >  2:300454/6‑149 (MQ=255)
                                                                                        gaagaTATGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTggg                                                     >  1:46147/1‑149 (MQ=255)
                                                                                                 cgcAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTtggaaaatggccgtgagaaccattgtttaaccttttgtggcgaaccgctgcaacaggcacaagtgctttacgcactgtggcttggcgcgaatctgcaggccaaaa                                            <  1:84395‑M1/149‑106 (MQ=255)
                                                                                                           tGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCCCGAATCTGCAGGCCaaa                                  >  1:213188/1‑149 (MQ=255)
                                                                                                                 aaGGTGTTCGCGGCGTGATCGCCCTGCTtggaaaatggccgtgagaaccattgtttaaccttttgtggcgaaccgctgcaacaggcacaagtgctttacgcactgtggcttggcgcgaatctgcaggccaaaatttcgcgcagtttcga                            <  1:143320‑M1/149‑122 (MQ=255)
                                                                                                                 aaGGTGCTCGCGGCGTGGTCGCCCTGCTCTCTCAGCTGCTGCAAAACGGCCGAGAGCAGGATTGTTTAACCTTTTGTGGCGAACCGCAGCAACCGGCGCAAGTCCTTTAATCACTTAGGATTGGCGCGAATCTGCAGGCCAACATTTcg                            >  2:436574/1‑149 (MQ=255)
                                                                                                                 aaGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTcg                            >  1:255992/1‑149 (MQ=255)
                                                                                                                        tCGCGGCGTGATCGCCCTGCTtggaaaatggccgtgagaaccattgtttaaccttttgtggcgaaccgctgcaacaggcacaagtgctttacgcactgtggcttggcgcgaatctgcaggccaaaatttcgcgcagtttcgagccactg                     >  1:498757‑M1/1‑21 (MQ=255)
                                                                                                                            ggcggcaTCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGa                 <  1:2749/143‑1 (MQ=255)
                                                                                                                                           ctctctCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCAAATCTGCAGGCCAAAATTTTGCGCAGTTTCGAGCCACTGGAAAAcac  >  2:62798/1‑147 (MQ=255)
                                                                                                                                            |                                                                                                                                                   
CCAGCAAACACTGAACCAGTTTTGCCAACATGGAACCATCAGTGGTTGCCTGACAGTAAAACTCTCTGCCGAAGTGTGCGATCTGTCAGAAGATATGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGC  >  NC_000913_3_hsa_tpiA/1726292‑1726579

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.