| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 3216668 = | 45 (1.390) | 3 (0.100) | 3/262 | NT | 7.1% | noncoding (68/78 nt) | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_hsa_tpiA | = 4614265 | 36 (1.170) | noncoding (27/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
GTGATGATGGCTCATATCAGCCTCCTTTTGCTTAATTAGATATATCTAATTTATATCTGATATGAGCGTTCTTGCAAGTGTAAAAATGATTTTTAAACGTGGACTCATCTCACACGTAGGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_hsa_tpiA/3216793‑3216668‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggatGCGGCGTGAACGCCTTATCCGGCCTACGGCACGTTAAACAACGTATACGTGTTATTAAGCAACGCTTGCGCAATCTCATCCGCCGGTTCCCGGCGCAACTCGCAAAGCACGGCGAACACACGGGCAGCCTGCTCCGGGCGGTTAGGCT < NC_000913_3_hsa_tpiA/4614265‑4614118 GTGATGTTTGTTTATATCAGCCTCCTGTTGCTTAATTAGATATATCTAATTTATATCTGATATGAGCGTTCTTGCAAGTGTAAAAATGATTTTTAAACGTGGACTCATCTCACACGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGC < 2:581929/149‑1 AATTTATATCTGATATGAGCGTTCTTGCAAGTGTAAAAATGATTTTTAAACGTGGACTCATCTCACACGTAGGCCGGATGCGGCGTGAACGCCTTATCC < 1:132614/99‑1 AATTTATATCTGATATGAGCGTTCTTGCAAGTGTAAAAATGATTTTTAAACGTGGACTCATCTCACACGTAGGCCGGATGCGGCGTGAACGCCTTATCC > 2:132614/1‑99 GGCCGGATGCGGCGGGAACGCCTTATCCGGCCTACGGCACGTTAAACAACGTATACGTGTTATTAAGCAACGCTTGCGCAATCTCATCCGCCGGTTCCCGGCGCAACTCGCAAAGCACGGCGAACACACGGGCAGCCTGCTCCGGGCGG < 2:485972/149‑1 CGGATGCGGCGTGAACGCCTTATCCGGCCTACGGCACGTTAAACAACGTATACGTGTTATTAAGCAACGCTTGCGCAATCTCATCCGCCGGTTCCCGGCGCAACTCGCAAAGCACGGCGAACACACGGGCAGCCTGCTCCGGGCGGTTA < 2:528314/149‑1 CGGATGCGGCGTGAACGCATTATCCGGCCTACGACACGTTAAACAACTTATACGTTTTATTAAGCAACGCTTGCGCAATCTCTCCCGCCGGTTCCCGGCGCAACGCGCAAAGCACGGCGAACACACGGGCAGCCTGCTCCGGGCGGTTA < 2:375158/149‑1 TGCGGCGGGAACGCCTTATCCGGCCTACGGCACGGTAAACAACGTATACGTGTTATTAAGCAACGCTTGCGCAATCTCATCCGCCGGTTCCCGGCGCAACTCGCAAAGCACGGCGAACACACGGGCAGCCTGCTCCGGGCGGTTAGGCT < 2:589413/149‑1 GTGATGATGGCTCATATCAGCCTCCTTTTGCTTAATTAGATATATCTAATTTATATCTGATATGAGCGTTCTTGCAAGTGTAAAAATGATTTTTAAACGTGGACTCATCTCACACGTAGGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_hsa_tpiA/3216793‑3216668‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggatGCGGCGTGAACGCCTTATCCGGCCTACGGCACGTTAAACAACGTATACGTGTTATTAAGCAACGCTTGCGCAATCTCATCCGCCGGTTCCCGGCGCAACTCGCAAAGCACGGCGAACACACGGGCAGCCTGCTCCGGGCGGTTAGGCT < NC_000913_3_hsa_tpiA/4614265‑4614118 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |