Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_000913_3_hsa_tpiA 257,908 Δ776 bp 100% [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_hsa_tpiA 257908–258676 258683 8–776 35 [1] [0] 33 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 2579070 (0.000)26 (0.860) 23/260 NT 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913_3_hsa_tpiA 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

GCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTG  >  NC_000913_3_hsa_tpiA/258536‑258824
                                                                                                                                                    |                                                                                                                                            
cgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaa                                                                                                                                              <  2:130330‑M2/1‑1 (MQ=255)
cgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaa                                                                                                                                              <  1:308669‑M2/1‑1 (MQ=255)
cgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaa                                                                                                                                              <  2:102274‑M2/1‑1 (MQ=255)
                 tgctaaattttgccaagttggtaaaacagtttcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAt                                                                                                                             <  2:242449‑M2/18‑1 (MQ=255)
                  gctaatttttaactatttgataaaaaagttggattaacaaaggagatagcaatgccgttaccgagtggccacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAtt                                                                                                                            <  1:280701‑M2/19‑1 (MQ=255)
                    taaattttgccaatttggtaaaacaattgcatcacaacaggagatagcaatgacgttacctagtggacacccgaagagcaaatagattaaaaaatttaccgcactaggcccgtatattcgtaaaggtaAGTCCAAAGATCATCCTTTCt                                                                                                                          >  2:199705‑M2/129‑149 (MQ=255)
                           ttcaaatttggtaaaacagtgtcattacagcaggagatagcaatgacgttaccgagtggccacccgaaaagcagaatgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGa                                                                                                                   <  2:540662‑M2/28‑1 (MQ=255)
                                   tggttaaacagttgcatcacaacgggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaagtttaccgctctaggctcgtatattcgtgaaggtaAGTGCACAGATAATCGATTCTTTTTCGATTGTCTgg                                                                                                           <  1:520261‑M2/36‑1 (MQ=255)
                                     gtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagatggatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCAATTCTATTTCGAGTGACTGgcc                                                                                                         >  2:188604‑M2/112‑148 (MQ=255)
                                              ttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTc                                                                                                <  1:499259‑M2/47‑1 (MQ=255)
                                                gcctcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCaa                                                                                              <  1:174661‑M2/49‑1 (MQ=255)
                                                 catcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagatggatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAc                                                                                             >  1:521746‑M2/100‑149 (MQ=255)
                                                   tcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgacggtaAGTGCAAAGATAAACGATTCTTTTTCGATTGTCTGGCTGTATGCGTAAACGt                                                                                           >  2:329528‑M2/98‑149 (MQ=255)
                                                        acaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAAc                                                                                      <  1:509642‑M2/57‑1 (MQ=255)
                                                          agtgaataacaatgacgttaccgagttgacacccgaagatcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCg                                                                                    <  2:177663‑M2/59‑1 (MQ=255)
                                                           ggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcttgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCgg                                                                                   <  2:530239‑M2/60‑1 (MQ=255)
                                                                   caatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGaa                                                                           <  1:488149‑M2/68‑1 (MQ=255)
                                                                   caatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGGATTCGTCAACGTGAAACCGGCACCGGaa                                                                           <  1:611753‑M2/68‑1 (MQ=255)
                                                                                 agtggacacccgaagagcagattgatcaaaaagtttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGGTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTg                                                             <  2:452979‑M2/82‑1 (MQ=255)
                                                                                 agtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTg                                                             <  1:393415‑M2/82‑1 (MQ=255)
                                                                                        acccgaagagcagattgatcaaaaaatttcccgcactaggcccccatatgcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCtgg                                                      <  1:422818‑M2/89‑1 (MQ=255)
                                                                                         gctgaagagcagattgatcaaaaaatttaccgcactaggcctgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCtggt                                                     <  1:283936‑M2/90‑1 (MQ=255)
                                                                                         cccgaacagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCCGAAGTGCGTGAATTCTGGGGCtggt                                                     <  1:559535‑M2/90‑1 (MQ=255)
                                                                                          ccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGAAAAGATAATCGCTTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGCAAGTGCGTGAATTCTGCGGCtggtg                                                    >  1:607004‑M2/59‑149 (MQ=255)
                                                                                             aagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggat                                                 <  1:264747‑M2/94‑1 (MQ=255)
                                                                                              agagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCCGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggatg                                                <  1:118219‑M2/95‑1 (MQ=255)
                                                                                                  cagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGCCCGGCGGTAGGTGGCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGc                                            >  1:605822‑M2/51‑149 (MQ=255)
                                                                                                                        gcactaggcctgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCCTCAACGTCAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGttt                      <  2:308535‑M2/121‑1 (MQ=255)
                                                                                                                          actaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTTGCTGTATGCGTCAACGTGAAACCTGCACCGGTAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCCGGAATCCCgttttc                    >  2:393515‑M2/27‑148 (MQ=255)
                                                                                                                                     atagttgtgaaggtgAGTGCAAAGATAATCGATTCGTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTAc         <  1:197314‑M2/134‑1 (MQ=255)
                                                                                                                                           gtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGttt   >  2:573882‑M2/10‑149 (MQ=255)
                                                                                                                                            tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGGAGGAATCCCGTTTTACCTACAGTTgccaggtcg  >  1:251288‑M2/9‑145 (MQ=255)
                                                                                                                                            tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTg  <  2:228810‑M2/141‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                            
GCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTG  >  NC_000913_3_hsa_tpiA/258536‑258824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.