New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 1207805	7 (0.220)	12 (0.420)	11/244	NT	58.3%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913_3_hsa_tpiA	= 1209602	11 (0.390)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

CGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGC  >  NC_000913_3_hsa_tpiA/1209456‑1209748                                                                                                                                                   |                                                                                                                                                   cGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcc                                                                                                                                                  >  1:465908‑M2/1‑147 (MQ=255) cGTAAATCAGGCAATTTATGTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcc                                                                                                                                                  >  1:231573‑M2/1‑147 (MQ=255)        cAGGCAATTTATTTGTCGGATAAGCCTTGGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctccc                                                                                                                                           >  1:148662‑M2/1‑140 (MQ=255)         aGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTCTTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACCGGTAAGGAAGAGcctactccca                                                                                                                                          <  2:259756‑M2/149‑11 (MQ=255)           gCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaa                                                                                                                                        >  1:595617‑M2/1‑137 (MQ=255)                          gATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga                                                                                                                         >  1:28136‑M2/1‑122 (MQ=255)                               gCCTTTGCCAGTTCCGGGTAGTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa                                                                                                                    <  2:321295/149‑1 (MQ=255)                                     gCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTCATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcac                                                                                                              <  1:255733‑M2/149‑39 (MQ=255)                                         gTTCCGGGTATTCTTGAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtg                                                                                                          >  1:203319‑M2/1‑107 (MQ=255)                                         gTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGGTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaatccaaggttttcgagagccgtttgcacagtg                                                                                                          >  2:604380‑M2/1‑107 (MQ=255)                                           tCCGGGCATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgcc                                                                                                        >  1:559545‑M2/1‑105 (MQ=255)                                                      ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttga                                                                                             <  2:508479‑M2/149‑56 (MQ=255)                                                      ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCTTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatca                                                                                             <  1:402773/149‑1 (MQ=255)                                                      ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatca                                                                                             >  1:120730/1‑149 (MQ=255)                                                       tcAGCAGAAAAAGCGGCACCATGGCACTGCAGCCAGCCACTTGGCCGAGGGGCTGGAGGCCACGGAACCGGGCCACCAACAGGTAATGCAGAGCCTTCTCACAAACCAAGATTTATGAAAATGAACAAATAACAAGCAAATGGcatcat                                                                                            <  2:421720/149‑1 (MQ=255)                                                          gcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatc                                                                                         >  1:200130‑M2/1‑90 (MQ=255)                                                             gAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACCCCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAAGAAGAAATAACAAGCAACTGGCATCATTCCTGc                                                                                      >  2:11195/1‑149 (MQ=255)                                                                             tGCATTTCAGGCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACCCCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcgg                                                                      >  2:473918‑M2/1‑71 (MQ=255)                                                                                 tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttcgcccaaaccaacgttttcgagagccgtttgcccattgccatccgatttgatatccccaaacggattcttgcggcttc                                                                  <  2:145373‑M2/149‑83 (MQ=255)                                                                                  ttCAGCCAGCCTGTTGGCGGAGTGGCCGAAGTCCATGCCCCCGGCCCGTCCACAGCGAATGCAGAGCCTTCTCCTAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa                                                                 <  1:448996/149‑1 (MQ=255)                                                                                       ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCtt                                                            >  1:546172/1‑149 (MQ=255)                                                                                                    ggAGTGGCTGAAGGCCACGGAACCTGGACACCAACAGCTAATGCAGAGccttatcccaaaccaaggttttcgagagccgtttgcacagtgccagccgatttgatatcgccaaacggattcttgcgccttatcagcagcgcgtgaagtgc                                               >  1:569855‑M2/1‑48 (MQ=255)                                                                                                     gAGTGGCTGAAGGGCACGGAATCGGGACACCAACAGGTAATGCAGAGtcttctcccaaaccaagggtttcgagagccgtttgcacaggtccatccgatgtgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcg                                              >  2:373572‑M2/1‑47 (MQ=255)                                                                                                          gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAt                                         >  2:324838/1‑149 (MQ=255)                                                                                                                      ggAACCGGGACACCAACAGGTAATACAGAGCCTTCTCCCAAACCAACGTTTATGAAAATAAAGAAATAACAAGCAAATGGCATCAATCATGCTTATACCATGGGGAATTAACATACTTATTGACTATGTACGCGTATAAACAAATAAcc                             >  2:481798/1‑149 (MQ=255)                                                                                                                          ccGGGACACCAACACGTAATGCAGAGCCTTTTTCCAAACCAACTTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa                         <  1:508627/149‑1 (MQ=255)                                                                                                                                    aaCAGCTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagaagcgcgcgaactgccgtaactaaatggccctgccgccccctccccc               <  2:38056‑M2/149‑134 (MQ=255)                                                                                                                                         gTAATGCAGCGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAGCCACAAATGACCAGACCCCAGCTCTACCACg          >  2:244392/1‑149 (MQ=255)                                                                                                                                                 gagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaaccgcagcgcgcgaagtgcggtaagtaactggtcgtgccgcccctcctccagcctggcaccgga  <  2:387987‑M2/149‑147 (MQ=255)                                                                                                                                                   |                                                                                                                                                   CGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGC  >  NC_000913_3_hsa_tpiA/1209456‑1209748

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.