New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA 4519284 =27 (1.130)3 (0.130) 3/268 3.0 11.1% intergenic (+78/+36) insB1/yjhU IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element
?NC_000913_3_hsa_tpiA 4519308 = 23 (1.030)intergenic (+102/+12) insB1/yjhU IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTGCCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGCACCCAACGTTGCGTCATAGCCTCTTTCCCCACCAGCAAGGAAGATCTTCCGTT  >  NC_000913_3_hsa_tpiA/4519162‑4519456
                                                                                                                                                  |                                                                                                                                                     
gACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAgttg                                                                                                                                                     >  2:227794/1‑149 (MQ=255)
 aCAAGGTCTTCGGGCATAATCTTTACATGGGAGACTGTCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAACCAATAAAATCCTGCCCCATATCTACATGGGGCAgttgt                                                                                                                                                    <  1:287326/149‑1 (MQ=255)
   aaGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTc                                                                                                                                                  >  1:263080/1‑149 (MQ=255)
           cGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCtttt                                                                                                                                          <  2:159767/149‑1 (MQ=255)
            gggCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTa                                                                                                                                         <  2:306474/149‑1 (MQ=255)
              gCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTCgt                                                                                                                                       >  2:192494/1‑149 (MQ=255)
                        aaCATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTc                                                                                                                             >  2:310585/1‑149 (MQ=255)
                               aaCACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGTTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCAATATCTACATTGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGcc                                                                                                                      >  2:399601/1‑149 (MQ=255)
                                acacTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTATTGTGGTCATTCACAccccc                                                                                                                     >  2:310353/1‑148 (MQ=255)
                                              ttGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTc                                                                                                                                                  >  2:83805/1‑106 (MQ=255)
                                              ttGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTc                                                                                                                                                  <  1:83805/106‑1 (MQ=255)
                                                                  ttttATTTCATATATTGTGGGTATTGTTCTTATGATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGTGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTGCCGTTCCTTCATCAACAATCAg                                                                                  <  2:368321/148‑1 (MQ=255)
                                                                      aTTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAACAACTCTGCCGTTCCTTCATCAACAATCAGGTcc                                                                              <  1:227794/149‑1 (MQ=255)
                                                                                    gggTATTGTTCTTATTATCGCGGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTGCCGTTCCTTTATCAACAATCAGGTCCGTGACATAtcctcc                                                                >  1:199978/1‑149 (MQ=255)
                                                                                       tATTGTTCTTATTATCGCCGCTAATCCATAAAATCCTGCCCCATATCTACATGGGTCAGTGGTTCATTGTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTGCCGTTCCTTCATCAACAATCAGGTCCATGACATATCCTCCcag                                                             >  2:107705/1‑149 (MQ=255)
                                                                                           gTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTGCCGTTCCTTCATCACCAATCAGGTCCGTGACCTATCATCCcagcaga                                                         >  1:394142/1‑148 (MQ=255)
                                                                                            ttCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCGAGCAAAAACTCTGCCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGGAggg                                                        >  1:251747/1‑149 (MQ=255)
                                                                                             tCTTATTATCGCAGCGAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTGCCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGc                                                       <  1:160710/149‑1 (MQ=255)
                                                                                               ttattaTCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTGCCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGCAc                                                     <  1:211090/149‑1 (MQ=255)
                                                                                                   tatCGCCGCTAATCAATAAAATCCTGCCCCATATCTCCATGGTGCAGTTGTTCATTCTTTTAGTGTGCTGGTACGGGTGCAAGCAACAAGCTGTCCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGCACCCaa                                                 <  1:414109/149‑1 (MQ=255)
                                                                                                          gcgaaTCAATAAAATCCAGCCCCATAACTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTGCCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGCACCCAACGTTGCg                                          <  2:130532/146‑1 (MQ=255)
                                                                                                                              cccATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTGCCGt                                                                                                    >  1:342842/1‑71 (MQ=255)
                                                                                                                              cccATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTGCCGt                                                                                                    <  2:342842/71‑1 (MQ=255)
                                                                                                                                                  ttgttCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTGCCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGCACCCAACGTTGCGTCATAGCCTCTTTCCCCACCAGCAAGGAAGATCTTCCGtt  >  1:384649/1‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                     
GACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTGCCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGCACCCAACGTTGCGTCATAGCCTCTTTCCCCACCAGCAAGGAAGATCTTCCGTT  >  NC_000913_3_hsa_tpiA/4519162‑4519456

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.