| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 4555343 = | 22 (0.920) | 4 (0.180) | 4/266 | 2.6 | 17.6% | intergenic (+12/+129) | uxuR/yjiC | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | 4555372 = | 17 (0.770) | intergenic (+41/+100) | uxuR/yjiC | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTG‑‑GATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCAT > NC_000913_3_hsa_tpiA/4555227‑4555500 | cTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTG‑‑GATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCtt < 2:49805/149‑1 (MQ=255) cGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTG‑‑GATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAAt < 2:315569/149‑1 (MQ=255) tctcGAACGTTGACGATATTTATTTTGATGGGTAGCTGTTTG‑CTCCT‑GCTGCTGTTGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTg < 1:95920/149‑1 (MQ=255) cgtgtgcGTTGACGATATTTTTTTTGAGGGTTATCTGTTTGATTCATGGCCGCGG‑‑GATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGt < 2:93462/143‑1 (MQ=255) gtGACGATATTTATTTTGATGCCTGTCTGTTTGATTCATGGCCGCTG‑‑GATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTTCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCa < 1:225681/148‑1 (MQ=255) gACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTG‑‑GATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAgg < 1:377169/149‑1 (MQ=255) gATATTTATTTTGATGGCTATTTGTTTGATTCATGGCAGATG‑‑GATAAAGTCGACGCCTAACTTATTATAATAAGCGCAAGGCTCAATCGTCCTTGCGCTCGATAAGTTTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTa < 1:414537/149‑1 (MQ=255) tttatttTGATGGCTATCTGTTTGATTCATGGCCGCTG‑‑GATAAAGTAGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCTCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGt > 2:139756/1‑149 (MQ=255) cagatagctaaacaataccctgcaatttacaaagtaatactcattgcgacttcttaatttaagaAAGCGCAAGGGTAAACGTTCCTTGCGCTTTc < 2:221127‑M1/31‑1 (MQ=255) cagatagctaaacaataccctgcaatttacaaagtaatactcattgcgacttcttaatttaagaAAGCGCAAGGGTAAACGTTCCTTGCGCTTTc > 1:221127‑M1/65‑95 (MQ=255) cTGTTTTATTCAGTGCCTCTG‑‑GATTAAGTCGACGCCTGACGTATTATTATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGCGAATGATTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAAc < 1:122233/149‑1 (MQ=255) cATGGCCGCTG‑‑CATAAAGTCGACGCCTGACGTATAATGAGAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTa < 1:243958/149‑1 (MQ=255) ggCCGCTG‑‑GATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTa < 2:116358/149‑1 (MQ=255) gCCGCTG‑‑GATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTAc > 1:292972/1‑149 (MQ=255) tG‑‑GATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCAtt > 2:20872/1‑149 (MQ=255) aaaGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGc > 2:133109/1‑98 (MQ=255) aaaGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGc < 1:133109/98‑1 (MQ=255) gACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTa < 2:91662/149‑1 (MQ=255) gACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACATGAATGTTAGTACTCATTATTCCTGGTAGTTCTTTa > 1:129329/1‑149 (MQ=255) gaaagcgcaaggaacgtttacccttgcgcttTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTg < 2:221127‑M2/64‑1 (MQ=255) gaaagcgcaaggaacgtttacccttgcgcttTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTg > 1:221127‑M2/32‑95 (MQ=255) agcgcaaggaacgtttacccttgcgcttTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAgg < 1:66732‑M2/46‑1 (MQ=255) agcgcaaggaacgtttacccttgcgcttTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAgg > 2:66732‑M2/29‑74 (MQ=255) AAGGTTAAACCTTCCTTGCCGTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATTTTAGTACTCATTCTTCCTGCTAGTTATTTACCAATATAATTCCATTCAc > 1:45241‑M1/1‑149 (MQ=255) GGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATCATTCCATTCACCAt < 2:413966‑M1/149‑1 (MQ=255) | CTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTG‑‑GATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCAT > NC_000913_3_hsa_tpiA/4555227‑4555500 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |