| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 1373284 | 19 (0.800) | 4 (0.180) | 4/270 | 2.6 | 17.4% | coding (63/882 nt) | ycjO | putative sugar ABC transporter permease |
| ? | NC_000913_3_hsa_tpiA | = 1373292 | 20 (0.890) | coding (71/882 nt) | ycjO | putative sugar ABC transporter permease | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACTACGCTGCAAGCGAGCCAGAAAAAACTGGATGAACTGATCGAACAGCACTAAACCCAGGACAGGAATCCGCAATGAACAGGCTTTTTTCAGGTCGTTCCGATATGCCCTTTGCGCTGCTGCTTCTCGCGCCCAGCTTATTACTGCTGGGCGGTCTGGTGGCGTGGCCGATGGTGTCGAATATCGAAATCAGTTTTTTACGTCTGCCGCTCAATCCCAACATCGAGTCAACGTTTGTTGGGGTGAGCAACTATGTGCGTATCCTCTCCGATCCCGGCTTCTGGCATTCGCT > NC_000913_3_hsa_tpiA/1373148‑1373439 | actacGCTGCAAGCGAGCCAGAAAAAACTGGATGAACTGATCGAACAGCACTAAACCCAGGACAGGAATCCGCAATGAACAGGCTTTTTTCAGGTCGTTTACATTTTCCTTTGTCTCTGCTGATTCTCGCGCCCAGCTAATTCCTgctg < 2:150483‑M2/149‑5 (MQ=255) cAGAAAAAACTGGATGAACTGATCGAACAGCACTAAACCCAGGACAGGAATCCGCAATGAACAGGCTTTTTTCAGGTCGTTCCGATATGCCCTTTGCGCTGCTGCTTCTCGCGCCCAGCTTATTACTGCTGGGCGGTCTGgtggcgtgg < 1:256381/149‑1 (MQ=255) aCTGGATGAACTGATCGAACAGCACTAAACCCAGGACAGGAATCCGCAATGAACAGGCTTTTTTCAGGACGTTCAGATATGCCCTTTGCGCTGCTGCTTCTCGCGCCCAGCTTATTACTGCTGGGCGGTCTGGTGGCGTGGccattgtt > 2:329367/1‑143 (MQ=255) tGGATGAACTGATCGAACAGCACTAAACCCAGGACAGGAATCCGCAATGAACAGGCTTTTTTCTTGTCGTTCCGATATGCCCTTGGCGCCGCTCCTACCCGCCCCCAGCTTATTACTGCCGGGCGGTCTGATGGCGCGGCCGATGgtgc > 2:56291/1‑148 (MQ=255) tCGAACAGCACTAAACCCAGGACAGGAATCCGCAATGAACAGGCTTTTTTCAGGTCGTTCCGATATGCCCTTTGCGCTGCTGCTTCTCGCGCCCAGCTTATTACTGCTGGGCGGTCTGGTGGCGTGGCCGATGGTGTCGAATATcccca > 2:316134/1‑145 (MQ=255) cACTAAACCCAGGACAGGAATCCGCAATGAACAGGCTTTTTTCAGGTCGTTCCGATATGCCCTTTGCGCTGCTGCTTCTCGCGCCCAGCTTATTACTGCTGGGCGGTCTGGTGGCGTGGCCGATGGTGTCGAATATCGGAATCAGtttt > 1:38100/1‑149 (MQ=255) caggacaggaATCCGCAATGAACAGGCTTTTTTCAGGTCGTTCCGATATGCCCTTTGCGCTGCTGCTTCTCGCGCCCAGCTTATTACTGCTGGGCGGTCTGGTGGCGTGGCCGATGGTGTCGAATATCGAAATCAGTTTTTTACGTCTg < 2:160786/149‑1 (MQ=255) acaggaATCCGCAATGAACAGGCTTTTTTCAGGTCGTTCCGATATGCCCTTTGCGCTGCTGCTTCTCGCGCCCAGCTTATTACTGCTGGGCGGTCTGGTGGCGTGGCCGATGGTGTCGAATATCGAAATCAGTTTTTTACGTCTGCCGc > 1:280828/1‑149 (MQ=255) gaATCCGCAATGAACAGGCTTTTTTCAGGTCGTTCCGATATGCCCTTTGCGCTGCTGCTTCTCGCGCCCCGCTTATTACTGCTGGGCGGTCTGGTGGCGGGGCCGATGGTGTCGAATAGCGAAATCAGTTTTTTCAGTCCGCCGCTCaa > 2:409608/1‑149 (MQ=255) aCAGGCTTTTTTCAGGTCGTTCCGATATGCCCTTTGCGCTGCTGCTTCTCGCGCCCATCTTATTACTGCTGGGCGGTCTGGTGGCGTGGCCGATGGTGTCGAATATCGAAATCAGTTTTTTACGTCTGCCGCTCAATCCCAACATCGAg < 1:308585/149‑1 (MQ=255) aGGCTTTTTTCAGGTCGTTCCGATATGCCCTTTGCGCTGCTGCTTCTCGCGCCCAGCTTATTACTGCTGGGCGGTCTGGTGGCGTGGCCGATGGTGTCGAATATCGATTTCAGTGTTTTACGTCTGCCGCTGCATCCCAACATCGAGTc > 1:244242/1‑149 (MQ=255) gCTTTTTTCAGGTCGTTCCGATATGCCCTTTGCGCTGCTGCTTCTCGCGCCCAGCTTATTACTGCTGGGCGGTCTGGTGGCGTGGCCGATGGTGTCGAATATCGAAATCCGTTTTTTACGTCTGCCGCTCCATCTCAAAATCGCGTccg > 2:223015/1‑147 (MQ=255) gCTTTTTTCAGGTCGTTCCGATATGCCCTTTGCGCTGCTGCTTCTCGCGCCCAGCTTATTACTGCTGGGCGGTCTGGTGGCGTGGCCGATGGTGTCGAATATCGAAATCAGTTTTTTACGTCTGCCGCTCAATCCCAACATCGAGTCaa > 2:298162/1‑149 (MQ=255) cAGGTCGTTCCGATATGCCCTTTGCGCTGCTGCTTCTCGCGCCCAGCTTATTACTGCTGGGCGGTCTGGTGGCGTGGCCGATGGTGTCGAATATCGAAATCAGTTTTTTACGTCTGCCGCTCAATCCCAACATCGAGTCAACGTttgtt < 1:298162/149‑1 (MQ=255) cccTTTGCGCTGCTGCTTCTCGCGCCCAGCTTATTACTGCTGGGCGGTCTGGTGGCGTGGCCGATGGTGTCGAATATCGAAATCAGTTTTTTACGTCTGCCGCGCAATCCCAACATCGAGTCAACGTTTGTTGGGGTGAGCAACTAtgt < 2:280828/149‑1 (MQ=255) cgcTGCTGCTTCTCGCGCCCAGCTTATTGCTCCGGAGCCGTCTGGTGGAGTGGCCGATGGTGTCGAATATCGAAATCAGTTTTTTACGTCTGCCGCTCAATCCCAACATCGAGTCAACGTTTGTTGGGGTGAGCAACTATGTGCGTATc < 1:56291/149‑1 (MQ=255) tgctgctTCTCGCGCCCAGCTTATTACTGCTGGGCGGTCTGGTGGCGTGGCCGATGGTGTCGAATATCGAAATCAGTTTTTTACGTCTGCCGCTCAATCCCAACATCGAGTCAACGTTTGTTGGGGTGAGCAACTATGTGCGTATCctc > 2:288305/1‑149 (MQ=255) tcGCGCCCAGCTTATTACTgctgggcgcgagaagcagcagcgcaaagggcatatcggaacgacctgaaaaaagcctgttcattg < 2:285228‑M2/84‑66 (MQ=255) tcGCGCCCAGCTTATTACTgctgggcgcgagaagcagcagcgcaaagggcatatcggaacgacctgaaaaaagcctgttcattg > 1:285228‑M2/1‑19 (MQ=255) gcCCAGCTTATTACTgctgggcgcgagaagcagcagcgcaaagggcatatcggaacgacctgaaaaaagcctgttcattgcggattcctgtcctgggtttagtgctgttcgatcagttcatccagttttttctggctcgcgtgcagcgt < 1:369274‑M2/149‑135 (MQ=255) cccAGCTTATTACTgctgggcgcgagaagcagcagcgcaaagggcatatcggaacgacctgaaaaaagccggttcattgcggattcctgtcctgggtttagtgctgttcgatcagttcatccagttttttatggctcgcgtgcggattc < 2:225678‑M2/149‑136 (MQ=255) cAGCTTATTACTGCTGGGCGGTCTGGTGGCGTGGCCGATGGTGTCGAATATCGAAATCAGTTTTTTACGTCTGCCGCTCAATCCCAACATCGAGTCAACGTTTGTTGGGGTGAGCAACTATGTGCGTATCCTCTCCGATCCCGGCTTCt > 1:181856/1‑149 (MQ=255) cAGCTTATTACTGCTGGGCGGTCTGGTGGCGTGGCCGATGGTGTCGAATATCGAAATCAGTTTTTTACGTCTGCCGCTCAATCCCAACATCGAGTCAACGTTTGTTGGGGTGAGCAACTATGTGCGTATCCTCTCCGATCCCGGCTTCt > 2:295368/1‑149 (MQ=255) aGCTTATTACTGCTGGGCGGTCTGGTGGCGTGGCCGATGGTGTCGAATATCGAAATCAGTTTTTTACGTCTGCCGCTCAATCCCAACATCGAGTCAACGTTTGTTGGGGTGAGCAACTATGTGCGTATCCTCTCCGCTCCCGGCTTCTg > 2:73331/1‑149 (MQ=255) ctgctgGGCGGTCTGGTGGCGTGGCCGATGGTGTCGAATATCGAAATCAGTTTTTTACGTCTGCCGCTCAATCCCAACATCGAGTCAACGTTTGTTGGGGTGAGCAACTATGTGCGTATCCTCTCCGATCCCGGCTTCTGGCATTCGCt < 2:282096/149‑1 (MQ=255) | ACTACGCTGCAAGCGAGCCAGAAAAAACTGGATGAACTGATCGAACAGCACTAAACCCAGGACAGGAATCCGCAATGAACAGGCTTTTTTCAGGTCGTTCCGATATGCCCTTTGCGCTGCTGCTTCTCGCGCCCAGCTTATTACTGCTGGGCGGTCTGGTGGCGTGGCCGATGGTGTCGAATATCGAAATCAGTTTTTTACGTCTGCCGCTCAATCCCAACATCGAGTCAACGTTTGTTGGGGTGAGCAACTATGTGCGTATCCTCTCCGATCCCGGCTTCTGGCATTCGCT > NC_000913_3_hsa_tpiA/1373148‑1373439 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |