New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 378259721 (0.880)4 (0.180) 4/270 2.6 15.7% intergenic (‑35/+45) cysE/gpsA serine acetyltransferase/glycerol‑3‑phosphate dehydrogenase (NAD+)
?NC_000913_3_hsa_tpiA = 3782604 23 (1.020)intergenic (‑42/+38) cysE/gpsA serine acetyltransferase/glycerol‑3‑phosphate dehydrogenase (NAD+)
Rejected: Frequency below/above cutoff threshold.

AACTGGCCAGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCA  >  NC_000913_3_hsa_tpiA/3782475‑3782751
                                                                                                                                 |                                                                                                                                                   
aaCTGGCCAGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGt                                                                                                                                  <  2:407460/149‑1 (MQ=255)
 aCTGGCCAGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACGCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTa                                                                                                                                 >  1:220177/1‑149 (MQ=255)
       cAGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTTCGCGGGCCGGGTCATGGCGGGACCAAAg                                                                                                                           >  1:293961/1‑149 (MQ=255)
              ggCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAACATTGTTCCAGACAATTTCCAATTCCTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCt                                                                                                                    <  2:151869/149‑1 (MQ=255)
                           ccAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGgct                                                                                                       >  1:251289/1‑149 (MQ=255)
                                 ttCTGGCTTCGGCTGTAATATGGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTATGCGACGGCCGGGTTATATCCGTAACAAAGCTTCCCTGGGGCTAGTGGCTGCTgcg                                                                                                 >  2:87756/1‑149 (MQ=255)
                                            gCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCCCGTCCTTGc                                                                                      >  2:168759/1‑149 (MQ=255)
                                              tttAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGCCCCGTTCTACGCGGGCCGGGTCATAGCGGTCACACAGGTTCCCTAGGGTCAGTGGCTGCTGCGCTCGCCCTTGctg                                                                                    >  2:84380/1‑147 (MQ=255)
                                                   tatTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCAct                                                                               >  2:236390/1‑148 (MQ=255)
                                                            aGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTTCACGACCTAGTat                                                                      >  2:215634/1‑148 (MQ=255)
                                                            aGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGCCCTAGTaa                                                                      >  1:145322/1‑149 (MQ=255)
                                                             gaaaaTTTCCAGTTCTTCACACGACATTGTTTACTCCACACGATGAGATAATGACCGGCCCGGTCTGCGCGGCCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGGTATGCGCTGCTGCGCTCTTCCTGCCGTGCACGCCCTCGTaaa                                                                     >  2:178929/4‑149 (MQ=255)
                                                             gACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTaaa                                                                     <  1:342135/149‑1 (MQ=255)
                                                                   ttCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAAt                                                               <  1:385490/149‑1 (MQ=255)
                                                                              cacaCGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGGCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTcccg                                                    >  2:224613/1‑149 (MQ=255)
                                                                                 acGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTcgcgcgc                                                 >  2:33266/1‑149 (MQ=255)
                                                                                          cTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGcgggccggtcattatctcatcgtgtggagtaagcaatgtcgtgtgaagaactggaaattgtctggaacaatattaaagccgaagccagaacgctggcggactgggagcc                                        <  1:352099‑M2/149‑110 (MQ=255)
                                                                                            tACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGc                                      >  1:196738/1‑149 (MQ=255)
                                                                                                 cacaCGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAatat                                 >  1:48123/1‑149 (MQ=255)
                                                                                                                 gACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAAttt                 >  1:135406/1‑149 (MQ=255)
                                                                                                                  aCCGGCCCGTTCTGCGcgggccggtcattatctcatcgtgtggagtaagcaatgtcgtgtgaa                                                                                                      >  2:180269‑M2/1‑16 (MQ=255)
                                                                                                                  aCCGGCCCGTTCTGCGcgggccggtcattatctcatcgtgtggagtaagcaatgtcgtgtgaa                                                                                                      <  1:180269‑M2/63‑48 (MQ=255)
                                                                                                                   ccGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAAtgct                                                            >  2:41474/1‑104 (MQ=255)
                                                                                                                   ccGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAAtgct                                                            <  1:41474/104‑1 (MQ=255)
                                                                                                                           tggcgcgcGGGGCGTGTCAGAGGCGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTAt       <  2:396503/145‑1 (MQ=255)
                                                                                                                                ggcgGGCCGGGCCATAGCGGTAACAAAGGATCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCa  <  2:330573/148‑1 (MQ=255)
                                                                                                                                cgcgggccggtcattatctcatcgtgtggagtaagcaatgtcgtgtgaagaactggaaattgtctggaacaatattaaagccgaagccagaacgctggcggactgtgagccaatgctggccagtttttaccacgcgacgctactcaagc  >  2:352099‑M2/1‑2 (MQ=255)
                                                                                                                                 |                                                                                                                                                   
AACTGGCCAGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCA  >  NC_000913_3_hsa_tpiA/3782475‑3782751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.