New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 13941055 (0.070)79 (1.040) 67/272 0.2 94.0% coding (879/1614 nt) mppA murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit
?NC_000913_3_hsa_tpiA 1396044 = NA (NA)intergenic (‑122/‑32) ynaI/insH1 mechanosensitive channel protein, very small conductance/IS5 transposase and trans‑activator

GCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCGCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTAC  >  NC_000913_3_hsa_tpiA/1393961‑1394251
                                                                                                                                                |                                                                                                                                                  
gCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaag                                                                                                                                               >  2:783433‑M1/1‑145 (MQ=255)
   aaTTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtg                                                                                                                                            <  2:847567‑M1/150‑9 (MQ=255)
    aTTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgc                                                                                                                                           <  3:331812‑M1/150‑10 (MQ=255)
      tAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGtt                                                                                                                                         <  1:455522/150‑1 (MQ=255)
        aTCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaac                                                                                                                                       >  1:506141‑M1/1‑137 (MQ=255)
         tCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGTTATTCTGGGGCAGGGTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaaca                                                                                                                                      >  2:58244‑M1/1‑136 (MQ=255)
          cAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaa                                                                                                                                     <  1:327919‑M1/150‑16 (MQ=255)
             gAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATACCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATCCGCCGCCGCAGCTCGAGACCTATggcaggtgcgcacaagtc                                                                                                                                  >  2:480590‑M1/1‑132 (MQ=255)
               aTCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccc                                                                                                                                <  3:485017‑M1/150‑21 (MQ=255)
                   gCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgat                                                                                                                            >  3:168649‑M1/1‑126 (MQ=255)
                    gagCCACTAAGCGTTACCACGCGGGTTATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTTAAGGATATTCCGCGTCAGGTTTATACGCCTCCGCAGCTCGGGACCTATggaaggtgcgtccaagtccctgata                                                                                                                           <  2:819744‑M1/149‑26 (MQ=255)
                    cAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGTAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATAGGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgata                                                                                                                           <  2:532791‑M1/150‑26 (MQ=255)
                    cAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgata                                                                                                                           <  4:231123‑M1/150‑26 (MQ=255)
                     aGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatat                                                                                                                          <  4:246790‑M1/150‑27 (MQ=255)
                        cACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgag                                                                                                                       >  2:851867‑M1/1‑121 (MQ=255)
                                 ttACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                              >  1:44857‑M1/1‑112 (MQ=255)
                                     cTCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtca                                                                                                          >  3:143356‑M1/1‑108 (MQ=255)
                                      tCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcat                                                                                                         >  3:265352‑M1/1‑107 (MQ=255)
                                      tCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcat                                                                                                         <  1:221837‑M1/150‑44 (MQ=255)
                                      tCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAgc                                                                                                         >  2:352957/1‑150 (MQ=255)
                                             ggATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc                                                                                                  >  1:650706‑M1/1‑100 (MQ=255)
                                                 atTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggcgccata                                                                                              >  4:292317‑M1/1‑96 (MQ=255)
                                                         cACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                      >  3:348497‑M1/1‑88 (MQ=255)
                                                         cACCGAATCCTTCCCGAAAAATATGGATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                      <  2:721961‑M1/150‑63 (MQ=255)
                                                           ccGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtt                                                                                    >  1:697143‑M1/1‑86 (MQ=255)
                                                            cGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtt                                                                                    >  3:165376‑M1/1‑85 (MQ=255)
                                                            cGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtt                                                                                    <  4:165376‑M1/149‑65 (MQ=255)
                                                              aaTCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcat                                                                                 >  3:124156‑M1/1‑83 (MQ=255)
                                                              aaTCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcat                                                                                 <  1:78052‑M1/150‑68 (MQ=255)
                                                                 ccTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat                                                                              <  1:783733‑M1/150‑71 (MQ=255)
                                                                  cTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatg                                                                             >  3:420122‑M1/1‑79 (MQ=255)
                                                                   ttCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                            >  1:163019‑M1/1‑78 (MQ=255)
                                                                     cccGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccc                                                                                                                                <  1:485189‑M1/96‑21 (MQ=255)
                                                                     cccGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccc                                                                                                                                >  2:485189‑M1/1‑76 (MQ=255)
                                                                       cGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatc                                                                                                                    >  3:124400‑M1/1‑74 (MQ=255)
                                                                       cGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatc                                                                                                                    <  4:124400‑M1/106‑33 (MQ=255)
                                                                        gAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctg                                                                                                                              >  1:554065‑M1/1‑73 (MQ=255)
                                                                        gAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctg                                                                                                                              <  2:554065‑M1/95‑23 (MQ=255)
                                                                        gAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggt                                                                                                                                             >  3:535923‑M1/1‑73 (MQ=255)
                                                                        gAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggt                                                                                                                                             <  4:535923‑M1/80‑8 (MQ=255)
                                                                           aaaTATGTGTCAGAGGCTGTTGAAGGATATTCCGGGGCAGGTTGATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgggatcatgtttgtcatctggagccatagaacagtgttcatcatgagtcatcaa                                                                    <  4:470692‑M1/150‑81 (MQ=255)
                                                                           aaaTATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcaacatgagtcatcaa                                                                    >  1:2724‑M1/1‑70 (MQ=255)
                                                                            aaTATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaac                                                                   <  2:506141‑M1/150‑82 (MQ=255)
                                                                               atGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactta                                                                >  2:231221‑M1/1‑66 (MQ=255)
                                                                                tGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttac                                                               <  3:453786‑M1/150‑86 (MQ=255)
                                                                                      aGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgc                                                         <  3:27477‑M1/150‑92 (MQ=255)
                                                                                       gAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgcc                                                        <  1:736767‑M1/150‑93 (MQ=255)
                                                                                       gAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgcc                                                        >  4:146195‑M1/1‑58 (MQ=255)
                                                                                         aGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCGCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGaaa                                                      <  1:352957/150‑1 (MQ=255)
                                                                                          gCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCtat                                                                                                                                                    >  2:292826/1‑55 (MQ=255)
                                                                                          gCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCtat                                                                                                                                                    <  1:292826/55‑1 (MQ=255)
                                                                                           cTGTGGAAGGATATTCCGGCGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaaggcccggataggatagcatgtttgtcatccggggccatagaacagcgtgcatcatgagtcatcaacttacccacgccgaca                                                    <  2:644108‑M1/150‑97 (MQ=255)
                                                                                             gTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagt                                                  >  1:239509‑M1/1‑52 (MQ=255)
                                                                                                gAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaa                                               <  3:247803‑M1/150‑102 (MQ=255)
                                                                                                 gagGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCGATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaat                                              <  1:480590‑M1/149‑103 (MQ=255)
                                                                                                 aaGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatcgcacagggttgatcatgagtcatcaacttaccttcgccgacagtgaat                                              >  1:772513‑M1/1‑48 (MQ=255)
                                                                                                 aaGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaat                                              >  4:357129‑M1/1‑48 (MQ=255)
                                                                                                     atatTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcag                                          <  2:650706‑M1/150‑107 (MQ=255)
                                                                                                     atatTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcag                                          <  1:851867‑M1/150‑107 (MQ=255)
                                                                                                        ttCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata                                                                                              <  4:461534‑M1/95‑55 (MQ=255)
                                                                                                        ttCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata                                                                                              >  3:461534‑M1/1‑41 (MQ=255)
                                                                                                           cGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttc                                                                                   <  1:748472‑M1/103‑66 (MQ=255)
                                                                                                           cGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttc                                                                                   >  2:748472‑M1/1‑38 (MQ=255)
                                                                                                             gggCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagc                                  <  2:406365‑M1/150‑115 (MQ=255)
                                                                                                              ggCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggt                                                                                                                                             >  3:208085‑M1/1‑35 (MQ=255)
                                                                                                              ggCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggt                                                                                                                                             <  4:208085‑M1/42‑8 (MQ=255)
                                                                                                                  ggTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt                             <  3:62938‑M1/150‑120 (MQ=255)
                                                                                                                    tttATACGCCGCCGCAGCTCGGGACCTCTggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtca                           >  1:620022‑M1/1‑29 (MQ=255)
                                                                                                                    tttATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtca                           <  4:168649‑M1/150‑122 (MQ=255)
                                                                                                                    tttATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcaacatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtca                           <  2:2724‑M1/150‑122 (MQ=255)
                                                                                                                         aCGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCGCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGaaaa                                >  3:433040/1‑140 (MQ=255)
                                                                                                                         aCGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCGCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGaaaa                                <  4:433040/140‑1 (MQ=255)
                                                                                                                           gccgccgcAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccaga                    <  4:143356‑M1/150‑129 (MQ=255)
                                                                                                                           gccgccgcAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagacca                      >  2:316694‑M1/1‑22 (MQ=255)
                                                                                                                           gccgccgcAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcagcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagacca                      <  1:316694‑M1/148‑127 (MQ=255)
                                                                                                                             cgccgcAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaa                  >  2:640977‑M1/1‑20 (MQ=255)
                                                                                                                              gccgcAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaa                 >  4:305011‑M1/1‑19 (MQ=255)
                                                                                                                                cgcAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaaga               <  1:783433‑M1/150‑134 (MQ=255)
                                                                                                                                 gcAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagag              >  1:533872‑M1/1‑16 (MQ=255)
                                                                                                                                 gcAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc                                                                      <  1:452624‑M1/94‑79 (MQ=255)
                                                                                                                                 gcAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc                                                                      >  2:452624‑M1/1‑16 (MQ=255)
                                                                                                                                       cGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc        <  3:357129‑M1/150‑141 (MQ=255)
                                                                                                                                             cTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcc  >  4:143168‑M1/1‑4 (MQ=255)
                                                                                                                                             cTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttctggtct  <  3:292317‑M1/150‑147 (MQ=255)
                                                                                                                                                tggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaaga               <  4:35555‑M1/134‑134 (MQ=255)
                                                                                                                                                tggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaaga               >  3:35555‑M1/1‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                  
GCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCGCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTAC  >  NC_000913_3_hsa_tpiA/1393961‑1394251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.