mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 30.0% | 148.9 / 86.2 | 110 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 270 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 59296 | 74 (0.980) | 13 (0.200) | 12/238 | 6.0 | 17.0% | intergenic (+17/+391) | yabP/rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent |
| ? | NC_000913_3_hsa_tpiA | = 59302 | 62 (0.940) | intergenic (+23/+385) | yabP/rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4040719 = | 83 (1.100) | 14 (0.200) | 12/254 | 6.4 | 17.6% | intergenic (+83/+187) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_hsa_tpiA | 4171844 = | 54 (0.760) | intergenic (+106/‑195) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4171821 = | 60 (0.790) | 13 (0.180) | 11/254 | 6.7 | 19.1% | intergenic (+83/‑218) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913_3_hsa_tpiA | 4171844 = | 54 (0.760) | intergenic (+106/‑195) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3423340 | 87 (1.150) | 13 (0.180) | 11/254 | 6.7 | 16.1% | intergenic (+146/+83) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_hsa_tpiA | 4171844 = | 54 (0.760) | intergenic (+106/‑195) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 382211 | NA (NA) | 11 (0.150) | 11/262 | 6.9 | NA | coding (538/906 nt) | insD1 | IS2 transposase TnpB |
| ? | NC_000913_3_hsa_tpiA | = 382218 | NA (NA) | coding (545/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 228744 | 49 (0.650) | 12 (0.170) | 11/260 | 6.9 | 20.4% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2757407 = | 74 (0.980) | 11 (0.160) | 10/250 | 7.0 | 13.6% | intergenic (+7/+237) | intA/yfjH | CP4‑57 prophage; integrase/CP4‑57 prophage; uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | 2757433 = | 72 (1.040) | intergenic (+33/+211) | intA/yfjH | CP4‑57 prophage; integrase/CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3324951 | 57 (0.750) | 11 (0.160) | 10/252 | 7.1 | 16.3% | intergenic (‑40/+50) | folP/ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| ? | NC_000913_3_hsa_tpiA | = 3324959 | 60 (0.860) | intergenic (‑48/+42) | folP/ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3439574 = | 76 (1.000) | 12 (0.180) | 9/244 | 7.3 | 14.7% | intergenic (‑65/+42) | yhdN/rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| ? | NC_000913_3_hsa_tpiA | 3439604 = | 71 (1.050) | intergenic (‑95/+12) | yhdN/rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 225281 | NA (NA) | 10 (0.140) | 10/262 | 7.3 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||