mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 1,544,021 | 1 | . | A | 74.2% | 539.6 / 197.1 | 194 | coding (40/1389 nt) | narU | nitrate/nitrite transporter |
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 25.8% | 515.6 / 192.0 | 302 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 720 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 59280 = | 244 (1.100) | 37 (0.190) | 28/228 | 15.9 | 14.7% | intergenic (+1/+407) | yabP/rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent |
| ? | NC_000913_3_hsa_tpiA | 59320 = | 218 (1.130) | intergenic (+41/+367) | yabP/rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3587430 = | 283 (1.270) | 33 (0.160) | 30/242 | 16.2 | 11.6% | coding (684/744 nt) | ugpQ | glycerophosphodiester phosphodiesterase, cytosolic |
| ? | NC_000913_3_hsa_tpiA | 3587464 = | 244 (1.190) | coding (650/744 nt) | ugpQ | glycerophosphodiester phosphodiesterase, cytosolic | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 4040683 | 219 (0.990) | 60 (0.270) | 31/258 | 16.9 | 21.1% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_hsa_tpiA | = 4213144 | 232 (1.060) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 382205 | NA (NA) | 54 (0.250) | 31/260 | 17.1 | NA | coding (532/906 nt) | insD1 | IS2 transposase TnpB |
| ? | NC_000913_3_hsa_tpiA | = 382224 | NA (NA) | coding (551/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3944978 | NA (NA) | 53 (0.250) | 29/250 | 17.2 | 38.2% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_hsa_tpiA | = 4038811 | 90 (0.410) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 228108 | NA (NA) | 50 (0.230) | 29/254 | 17.5 | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2727891 = | NA (NA) | 52 (0.250) | 28/250 | 17.6 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_hsa_tpiA | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 381292 = | NA (NA) | 49 (0.240) | 26/244 | 18.0 | NA | intergenic (‑32/‑59) | yaiX/insC1 | pseudogene, interrupted by IS2A; hexapeptide transferase superfamily; putative transferase/IS2 repressor TnpA |
| ? | NC_000913_3_hsa_tpiA | 381312 = | NA (NA) | intergenic (‑52/‑39) | yaiX/insC1 | pseudogene, interrupted by IS2A; hexapeptide transferase superfamily; putative transferase/IS2 repressor TnpA | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 227052 | 120 (0.540) | 51 (0.240) | 27/250 | 18.0 | 30.8% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3946053 | 15 (0.070) | 46 (0.210) | 26/254 | 18.8 | 76.0% | noncoding (2350/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_hsa_tpiA | = 3946069 | NA (NA) | noncoding (2366/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||