Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_000913_3_hsa_tpiA 257,908 Δ776 bp 100% [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_hsa_tpiA 257908 258683 776 28 [0] [0] 28 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 2579070 (0.000)22 (0.640) 20/260 NT 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913_3_hsa_tpiA 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

GCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTG  >  NC_000913_3_hsa_tpiA/258536‑258829
                                                                                                                                                    |                                                                                                                                                 
cgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgggaaggtaa                                                                                                                                                   >  1:145888‑M2/149‑149 (MQ=255)
         taaagatttgctaaattttgccaattgggtaaaacagttgcatcacaacaggggatagcagtgacgttaccgagtggacacccgaagagcagatggatgaaagaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGa                                                                                                                                          <  2:231958‑M2/10‑1 (MQ=255)
                ttgctaaattttgccaatctggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGa                                                                                                                                   <  1:404139‑M2/17‑1 (MQ=255)
                      aattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggcaAGTGCAAAGATAATCGATTCttt                                                                                                                             <  1:386633‑M2/23‑1 (MQ=255)
                               aatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaagctaAGTGCACACAGAATCGATGCTTTTTcgatgct                                                                                                                    >  2:310317‑M2/118‑146 (MQ=255)
                                 ttaggtaaaacaggtgaatcgcaacatgatatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaagttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCt                                                                                                                  <  2:170959‑M2/34‑1 (MQ=255)
                                         aacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAt                                                                                                          >  2:411304‑M2/108‑149 (MQ=255)
                                                        acaggggatagtaatgaaggtaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAAc                                                                                           <  2:329498‑M2/57‑1 (MQ=255)
                                                                      tgtcgttaccgagtggccacccgcagaccagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATCCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTg                                                                             <  2:114336‑M2/71‑1 (MQ=255)
                                                                          gttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccatatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCACCGTGAAACCGGCACCGGAAGTGCGTg                                                                         >  2:129322‑M2/75‑149 (MQ=255)
                                                                          gttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcaataggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAAGCGGAACCGCaattgtgct                                                                         >  2:248405‑M2/75‑145 (MQ=255)
                                                                                     gacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGCAAGTacgggagttgagcggc                                                              >  2:484630‑M2/64‑142 (MQ=255)
                                                                                        acccgaagagcagattgatcaaaaaatttaccgcactagacccgtatattcgtgaaggtaAGTGCAAAGATAATAGATTCTTTTTCGATTGTATGGCTGAATGCGTCAGCGTGAAACCGGGACCGGAAGTGCGTGAATTCTGGGGCtgg                                                           >  1:189490‑M2/61‑149 (MQ=255)
                                                                                          ccgaagagcaggttgatcaaaaaatttacgggaccaggcccgtatagtcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCtggtg                                                         <  2:280496‑M2/91‑1 (MQ=255)
                                                                                            gaagagcatattcagccaaaaatgtaccgcgcgggtcccgtatattctcgaaggtaAGTGCAAACATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtgga                                                       <  1:327354‑M2/93‑1 (MQ=255)
                                                                                              cgagcaaatggcttaaaacattttcctcactagccccgtatattcgtgaaggtaAGTGCAAAGATATTCGATTCTTTTTCGATTGTCTGGCTGTTTGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggatg                                                     <  2:296594‑M2/95‑1 (MQ=255)
                                                                                                 gaagattgatcaaaaaatataccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAg                                                  <  2:37808‑M2/98‑1 (MQ=255)
                                                                                                          tcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAgcg                                         >  2:631215‑M2/43‑149 (MQ=255)
                                                                                                          tcaaaaaatttaccgcactaggcccgtataataaaaaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAgcg                                         >  2:492666‑M2/43‑149 (MQ=255)
                                                                                                             aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAGAGATATTCGATTCTTTTTCGATTGTATCGCTGTATGAGTCAACGTGCAACCGCCAACGGAAGTGCGTGAATTCTTCTGCTGGTGGTTTGATCTGGAAGCGCAg                                      >  2:294795‑M2/40‑149 (MQ=255)
                                                                                                             aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAg                                      <  2:304526‑M2/110‑1 (MQ=255)
                                                                                                                            taggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAcc                       >  1:236655‑M2/25‑149 (MQ=255)
                                                                                                                                cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACa                   <  1:122206‑M2/129‑1 (MQ=255)
                                                                                                                                       attcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTGTGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCa            >  1:453279‑M2/14‑149 (MQ=255)
                                                                                                                                           gtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGCCGCTGGTAGATGGAGCTAGAAGCGCAGAAATCCCGTTTTACCTACacttacccaatt        >  2:371423‑M2/10‑144 (MQ=255)
                                                                                                                                            tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTAAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGGGGATGGAGCTTGAAGCGCAGGAAGCCAGTTTTAGCGACAGTTAACAGTCTg       >  2:160273‑M2/9‑149 (MQ=255)
                                                                                                                                            agaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTg       <  1:85389‑M2/141‑1 (MQ=255)
                                                                                                                                                 gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGATTGGTcta  >  1:283265‑M2/4‑148 (MQ=255)
                                                                                                                                                    |                                                                                                                                                 
GCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTG  >  NC_000913_3_hsa_tpiA/258536‑258829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: