New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 430996112 (1.240)12 (0.180)
+ACGTTCACTGCAATCTATTGGATTTGAAGGGTT		 7/204 9.0 12.4% noncoding (29/98 nt) REP37 (repetitive extragenic palindromic) element; contains 2 REP sequences REP37 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913_3_hsa_tpiA 1552244 = NA (NA)intergenic (+253/+154) fdnI/yddM formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_tpiA/430956‑430996
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC  >  NC_000913_3_hsa_tpiA/1552244‑1552288
                                         |||||||||||||||||||||||||||||||||                                             
AAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC  <  3:10745/119‑1
AAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC  >  4:10745/1‑119
        cATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAA     >  1:368399/2‑108
        cATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAA     <  2:368399/107‑1
         ATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTC                                            <  3:69893/68‑1
         ATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTC                                            >  4:69893/1‑68
               TGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCA           >  3:334592/1‑95
               TGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCA           <  4:334592/95‑1
                   GCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCAT          >  1:707465/1‑92
                   GCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCAT          <  2:707465/92‑1
                                       ACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCG                                      <  1:605785/44‑1
                                       ACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCG                                      >  2:605785/1‑44
                                                         ATTGGATTTGAAGGGTTTTCATGCCGGATGCGGCGT                            >  3:481198/1‑36
                                                         ATTGGATTTGAAGGGTTTTCATGCCGGATGCGGCGT                            <  4:481198/36‑1
                                         |||||||||||||||||||||||||||||||||                                             
AAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_tpiA/430956‑430996
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC  >  NC_000913_3_hsa_tpiA/1552244‑1552288

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.