New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 308969695 (0.930)15 (0.160) 14/250 8.4 14.6% intergenic (+18/‑59) galP/yggI D‑galactose transporter/Zn‑dependent metalloprotease‑related protein
?NC_000913_3_hsa_tpiA = 3089702 87 (0.910)intergenic (+24/‑53) galP/yggI D‑galactose transporter/Zn‑dependent metalloprotease‑related protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGGTGTATGCGGCTCTGAACGTACTGTTTATCCTGCTGACATTGTGGCTGGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_tpiA/3089539‑3089696
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttcctccGCGATGGGAGGAAGCTTGGGGAGATTAATCGTGAGCGCCTATTTCGCGCAGTTTACGACCTTTCATCAGATTACGTTCAATATGTTCCAGCGAAACGTGTTTGGTTTCCGGTACCAGCCACAATGTCAGCAGGATAAACAGTACGTTC  <  NC_000913_3_hsa_tpiA/3089702‑3089555
                                                                                                                                                                                                                                                                                                                  
GGGTGTATGCGGCTCTGAACGTACTGTTTATCCTGCTGACATTGTGGCTGGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAG                                                                                                                                                              >  1:415203/1‑150
  GTGTATGCGGCGCTGAACGTACTGTTTATCCTGCTGACATTGTGGCTTGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACATAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGAGCTCACGATTAATCTCCCCAAGCT                                                                                                                                                            >  1:655181/1‑150
   TGTATGCGGCTCTGAACGTACTGTTTATCCTGCTGACATTGTGGCTGGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTT                                                                                                                                                           >  2:452605/1‑150
       TGCGGCTCTGAACGTACTGTTTATCCTGCTGACATTGTGGCTGGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTC                                                                                                                                                       <  4:594213/150‑1
        GCGGCTCTGAACGTACTGTTTATCCTGCTGACATTGTGGCTGGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCC                                                                                                                                                      >  3:186923/1‑150
                    GTACTGTTTATCCTGCTGACATTGTGGCTGGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAGGCTTCCTCCGCGATGGGAGGA                                                                                                                                          >  4:54765/1‑150
                       CTGTTTATCCTGCTGACATTGTGGCTGGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCGCGATGGGAGGAAGC                                                                                                                                       <  2:427374/150‑1
                         GTTTATCCTGCTGACATTGTGGCTGGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCGCGATGGGAGGAAGCTT                                                                                                                                     <  2:984213/150‑1
                           TTATCCTGCTGACATTGTGGCTGGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAGGCTTCCTCCGCGATGGGAGGAAGCTTGG                                                                                                                                   <  3:54765/150‑1
                           TTATCCTGCTGACATTGTGGCTGGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCGCGATGGGAGGAAGCTTGG                                                                                                                                   <  4:326696/150‑1
                              TCCTGCTGACATTGTGGCTGGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCGCGATGGGAGGAAGCTTGGGGA                                                                                                                                <  4:186923/150‑1
                                CTGCTGACATTGTGGCTGGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCGCGATGGGAGGAAGCTTGGGGAGA                                                                                                                              <  3:125821/150‑1
                                      ACATTGTGGCTGGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCGCGATGGGAGGAAGCTTGGGGAGATTAATC                                                                                                                        <  2:994112/150‑1
                                                       GGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCGCGATGGGAGGAAGCTTGGGGAGATTAATCGTGAGCGCCTATTTCGC                                                                                                       <  2:415542/150‑1
                                                                                 ATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCGCGATGGGAGGAAGCTTGGGGAGATTAATCGTGAGCGCCTATTTCGCGCAGTT                                                                                                 >  2:394078/1‑130
                                                                                 ATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCGCGATGGGAGGAAGCTTGGGGAGATTAATCGTGAGCGCCTATTTCGCGCAGTT                                                                                                 <  1:394078/130‑1
                                                                                             ATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCGCGATGGGAGGAAGCTTGGGGAGATTAATCGTGAGCGCCTATTTCGCGCAGTTTACGACCTTTCATCAGATTACGTTCAATATGT                                                                 >  4:371338/1‑150
                                                                                                                       GAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCGCGATGGGAGGAAGCTTGGGGAGATTAATCGTGAGCGCCTATTTCGCGCAGTTTACGACCTTTCATCAGATTACGTTCAATATGTTCCAGCGAAACGTGTTTGGTTTCCGG                                       <  3:371338/150‑1
                                                                                                                                                   AAGCTTCCTCCGCGATGGGAGGAAGCTTGGGGAGATTAATCGTGAGCGCCTATTTCGCGCAGTTTACGACCTTTCATCAGATTACGTTCAATATGTTCCAGCGAAACGTGTTTGGTTTCCG                                        <  4:279080/121‑1
                                                                                                                                                   AAGCTTCCTCCGCGATGGGAGGAAGCTTGGGGAGATTAATCGTGAGCGCCTATTTCGCGCAGTTTACGACCTTTCATCAGATTACGTTCAATATGTTCCAGCGAAACGTGTTTGGTTTCCG                                        >  3:279080/1‑121
                                                                                                                                                       TTCCTCCGCGATGGGAGGAAGCTTGGGGAGATTAATCGTGAGCGCCTATTTCGCGCAGTTTACGACCTTTCATCAGATTACGTTCAATATGTTCCAGCGAAACGTGTTTGGTTTCCGGTACCAGCCACAATGTCAGCAGGATAAACAGTA       >  4:83028/1‑150
                                                                                                                                                       TTCCTCCGCGATGGGAGGAAGCTTGGGGAGATTAATCGTGAGCGCCTATTTCGCGCAGTTTACGACCTTTCATCAGATTACGTTCAATATGTTCCAGCGAAACGTGTTTGGTTTCCGGTACCAGCCACAATGTCAGCAGGATAAACAGTA       <  3:106137/150‑1
                                                                                                                                                        TCCTCCGCGATGGGAGGAAGCTTGGGGAGATTAATCGTGAGCGCCTATTTCGCGCAGTTTACGACCTTTCATCAGATTACGTTCAATATGTTCCAGCGAAACGTG                                                   <  2:518481/105‑1
                                                                                                                                                        TCCTCCGCGATGGGAGGAAGCTTGGGGAGATTAATCGTGAGCGCCTATTTCGCGCAGTTTACGACCTTTCATCAGATTACGTTCAATATGTTCCAGCGAAACGTG                                                   >  1:518481/1‑105
                                                                                                                                                           TCCGCGATGGGAGGAAGCTTGGGGAGATTGATCGTGAGCGCCTATTTCGCGCAGTTTACGACCTTTCATCAGATTACGTTCAATATGTTCCAGCGAAACGTGTTTGGTTTCCGGTACCA                                  <  1:20633/119‑1
                                                                                                                                                           TCCGCGATGGGAGGAAGCTTGGGGAGATTAATCGTGAGCGCCTATTTCGCGCAGTTTACGACCTTTCATCAGATTACGTTCAATATGTTCCAGCGAAACGTGTTTGGTTTCCGGTACCAGCCACAATGTCAGCAGGATAAACAGTACGTT   >  4:595014/1‑150
                                                                                                                                                           TCCGCGATGGGAGGAAGCTTGGGGAGATTAATCGTGAGCGCCTATTTCGCGCAGTTTACGACCTTTCATCAGATTACGTTCAATATGTTCCAGCGAAACGTGTTTGGTTTCCGGTACCA                                  >  2:20633/1‑119
                                                                                                                                                            CCGCGATGGGAGGAAGCTTGGGGAGATTAATCGTGAGCGCCTATTTCGCGCAGTTTACGACCTTTCATCAGATTACGTTCAATATGTTCCAGCGAAACGTGTTTGGTTTCCGGTACCAGCCACAATGTCAGCAGGATAAACAGTACGTTC  <  2:141151/150‑1
                                                                                                                                                                                                                                                                                                                  
GGGTGTATGCGGCTCTGAACGTACTGTTTATCCTGCTGACATTGTGGCTGGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_tpiA/3089539‑3089696
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttcctccGCGATGGGAGGAAGCTTGGGGAGATTAATCGTGAGCGCCTATTTCGCGCAGTTTACGACCTTTCATCAGATTACGTTCAATATGTTCCAGCGAAACGTGTTTGGTTTCCGGTACCAGCCACAATGTCAGCAGGATAAACAGTACGTTC  <  NC_000913_3_hsa_tpiA/3089702‑3089555

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.