New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 3468761	41 (0.920)	4 (0.090)	3/270	NT	8.5%	coding (1093/2694 nt)	chiA	periplasmic endochitinase
	?	NC_000913_3_hsa_tpiA	3469086 =	46 (1.050)					coding (768/2694 nt)	chiA	periplasmic endochitinase

CCATCCGCAACAATGACGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAATGAGTAATCGTTAACGCTATCCGCTGGTGTTGATGGCTCGCTGTTATCCGGAGTTGGGGTCAC  >  NC_000913_3_hsa_tpiA/3468613‑3468908                                                                                                                                                     |                                                                                                                                                    ccATCCGCAACAATGACGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGCCCC                                                                                                                                                     >  1:305062‑M1/1‑149 (MQ=255) ccATCCGCAACAATGACGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCC                                                                                                                                                     >  1:18546‑M1/1‑149 (MQ=255)  cATCCGCAACAATGACGCCGCCGTTATCAATTTCGCAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCGGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCGGGTTCCCCGTGGTCGATCTTTAGAGCCg                                                                                                                                                    >  1:224855‑M1/1‑148 (MQ=255)  cATCCGCAACAATGACGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGACAATCTTTAGaccca                                                                                                                                                    >  1:624090/1‑149 (MQ=255)   aTCCGCAACAATGACGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGacccaa                                                                                                                                                   >  1:518493/1‑149 (MQ=255)    tCCGCAACAATGACGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGacccaac                                                                                                                                                  >  1:501381/1‑149 (MQ=255)      cGCAACAATGACGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGacccaaccc                                                                                                                                                >  1:771316/1‑149 (MQ=255)       gCAACAATGACGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGacccaaccca                                                                                                                                               >  2:523728/1‑149 (MQ=255)           cactGACGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTAACTCAAATCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCTACCAg                                                                                                                                           >  1:583288/4‑149 (MQ=255)           caaTGCCGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAg                                                                                                                                           <  1:566448/149‑1 (MQ=255)             aTGACGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGAAATTGCGGGGGCAATCTTTAGACCCAACCCACCAGGc                                                                                                                                         <  1:622340/149‑1 (MQ=255)                aCGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCcacgccccaggcgtt                                                                                                                                      >  1:315102‑M1/1‑134 (MQ=255)                  gccgccGTGAGCAATTTCACAGGTAGGCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCt                                                                                                                                    <  1:136933/149‑1 (MQ=255)                     gccgTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAGTCTTTAGACCCAACCCACCAGGCGTTCTTGt                                                                                                                                 >  1:383729/1‑149 (MQ=255)                           aTCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACAt                                                                                                                           <  1:115565/149‑1 (MQ=255)                           aTCAATTTCACAGGTAGTCGGGTCACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCCCGAGACGCCATGGGTTATTGCAGTTTTCAGCGATGGTACCCCGTGGGCAATCTTTCGACCCCACCCACCAGGCGTTCTTGTAAActt                                                                                                                           >  2:687658/1‑147 (MQ=255)                            tCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTCACCAtt                                                                                                                          >  1:456006/1‑149 (MQ=255)                            tCAATTTCACAGGTAGTCGGGTTAACGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACAtt                                                                                                                          <  2:4735/149‑1 (MQ=255)                              aaTTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACCTTAc                                                                                                                        >  2:83820/1‑149 (MQ=255)                                 ttCACCGGCAGTCGGGTTACCGTACTGACTCAATTCCGGAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCTCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCAt                                                                                                                     <  2:673442/149‑1 (MQ=255)                                    acaGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTAGTGGAGTTTGCAGCGCTGGTACCCCGTGGGCGATCTCTAGACCCAACCCACCAGGCGCTCTTGTAAACATCACCATTGa                                                                                                                  >  2:239144/1‑149 (MQ=255)                                     caGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGaa                                                                                                                 >  2:706260/1‑149 (MQ=255)                                                gTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAACCATTACCATTCAACATAACCTggc                                                                                                      >  2:218756/1‑148 (MQ=255)                                                gTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCAAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGt                                                                                                      <  2:476059/149‑1 (MQ=255)                                                       cactgggtCAATTCCTCTGCGGTAGCTGTACGCTCGAGCCGTCATGGGGTATTGGATTTTTCAGCGCTGGTACCCCGTGGGCATTCTTTAGACCCAACCCACCAGGCGTTCTTGTAATCATTTTCATTGAAAATAACATGGTAAATTTc                                                                                               <  2:361530/142‑1 (MQ=255)                                                          tGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCt                                                                                            >  2:507301/1‑149 (MQ=255)                                                          tGACTCAAGTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCt                                                                                            <  1:63803/149‑1 (MQ=255)                                                           gACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCGGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACACTGCCGTTAAAAATAACATAGTAAAGTTCGGTa                                                                                           >  2:210736/1‑149 (MQ=255)                                                            aCTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTAc                                                                                          >  1:705308/1‑149 (MQ=255)                                                                   tCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTg                                                                                   <  1:526104/149‑1 (MQ=255)                                                                    ccGCAGCGGTAGCTGTACGCTCGAGCCGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCTCGTGTGCAATCTTTAGACCCAACCCACCAGGTGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTgg                                                                                  <  2:1173/149‑1 (MQ=255)                                                                       cAGCCGTAGCTGTACGCTGGAGGCGCCATGGGTTATTGGAGTTTTCAGCGAAGTTCGTCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCg                                                                               <  1:825276/149‑1 (MQ=255)                                                                                 tGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCATTCTTATATACATTAGAAGAGCAACGAGCATGGTAAATTTCGCTACCTTCATGTCCACTccgagcgt                                                                     >  2:272800/1‑143 (MQ=255)                                                                                        gcgggaCGCAATGGGGTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAATGa                                                              <  2:400425/145‑1 (MQ=255)                                                                                         ctggtcGCCAGGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGAAATGAg                                                             <  2:354429/144‑1 (MQ=255)                                                                                         cGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAATGAg                                                             <  1:810428/149‑1 (MQ=255)                                                                                            gaCGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAGTTTCGATACCTTCCTCGCCGCTCCACGCGTGCAATACGTaa                                                          >  2:660095/1‑149 (MQ=255)                                                                                              cGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAATGAGTAATc                                                        <  1:26068/149‑1 (MQ=255)                                                                                                     ggTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAATGAGTAGTCGTTAACg                                                 >  1:197252/1‑149 (MQ=255)                                                                                                         aTTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGTCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAATGCGTAATCGTTAATCCTAt                                             >  2:410979/1‑149 (MQ=255)                                                                                                          ttGGAGTTTTCAGCGCTGTTACCCCGTGGGCAATCTTTAGACCCtacccaccaggcgttcttataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctactacagcatag                                                          <  1:116398‑M1/135‑92 (MQ=255)                                                                                                          ttGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCtacccaccaggcgttcttataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctactacagcatag                                                          >  2:116398‑M1/1‑44 (MQ=255)                                                                                                          ttGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAATGAGTAATCGTTAACGCTATc                                            >  2:624653/1‑149 (MQ=255)                                                                                                               gtcttCAGCGCTGGTACCCCGTGGGCAATTCTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAATGAGTAATCGTTAACGCTATCCGCTg                                       <  1:549397/146‑1 (MQ=255)                                                                                                                 tttCAGCGCTGTTACCCCGTGGTCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAATGAGGAATCGTTAACGCTATCCGCTGgt                                     <  1:798674/149‑1 (MQ=255)                                                                                                                       cgcTGGTACCCCGGGCGCAATCTTGAGACCCAACCCACCAGGCGTTCTTGTAACCATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAATGAGTAATCGTTAACGCTATCCGCTGGTGTTGAt                               <  2:272129/149‑1 (MQ=255)                                                                                                                            gTACCCCGTGGGCAGTCTTTAGACGCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAATGAGTAATCGTTAACGCTATCCGCTGGTGTTGATGGCTc                          >  1:726155/1‑149 (MQ=255)                                                                                                                             tACCCCGTGGGCAATATTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAAGAACATGGTAAATTTCGCTACCTTCCTGTCCGCTCCACGCTTGCAATGAGTAATCGTTAACGCTATCCGCTGGTGTTGATGGCTCg                         <  2:464316/149‑1 (MQ=255)                                                                                                                               cccaGTGGGCACACTTTAGACCAAACCCACAGGGGTTTTTTGTACACATTTACCTTGAAATTAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAATGAGTAATCGTTAACGCTCTCCGCTGGTGTTGATGGCTCGCt                       <  1:387770/149‑1 (MQ=255)                                                                                                                                   gTGGGCAAGCTGCCGACCCtacccaccaggcgttcttataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctactacagcatagttgtcgtttgacttatcagctggggctggctgaacatca                   <  2:624090‑M1/149‑131 (MQ=255)                                                                                                                                       tcAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAATGAGTAATCGTTATCGCTATCCGCTGGTGTTGATGGCTCGCTGTTATCCg               <  1:707763/148‑1 (MQ=255)                                                                                                                                       gCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAATGAGTAATCGTTAACGCTATCCGCTGGTGTTGATGGCTCGCTGTTATCCg               <  2:326432/149‑1 (MQ=255)                                                                                                                                                  acccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGAAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAATGAGTAATCGTTAACGCTATCCGCTGGTGTTGAGGGCTCGCTGTTATCCGGGGTTGGGGTc    >  1:237161/1‑149 (MQ=255)                                                                                                                                                    ccaacccaCCCGGCGGTATTGTAAACATTAGCATTGGAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAATGAGTAATCGTTAACGCTATCCGTTTGTGTTGATGGCTCGCTGTTATCCGGAGTTGGGGTCAc  <  1:752687/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CCATCCGCAACAATGACGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAATGAGTAATCGTTAACGCTATCCGCTGGTGTTGATGGCTCGCTGTTATCCGGAGTTGGGGTCAC  >  NC_000913_3_hsa_tpiA/3468613‑3468908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.