| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 78821 = | 47 (1.210) | 4 (0.110) | 4/270 | 5.1 | 7.6% | intergenic (+22/+27) | setA/leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| ? | NC_000913_3_hsa_tpiA | 78841 = | 53 (1.460) | intergenic (+42/+7) | setA/leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTATCGCTTTACCATCGATGCCTTCCGCCGCCACTGCATGATGAACGGTCTGGACAGTATTGGGCTTACCTTGCAGCACGACGACGCCATTGCCGCTTATGAAGCAAAACAACCTGCGTTTATGAATTAATCCCCTTGCCCGGTCAAATGACCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_hsa_tpiA/78977‑78821‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaccgggcAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAA > NC_000913_3_hsa_tpiA/78841‑78907 CTATCGCTTTACCATCGATGCCTTCCGCCGGCACTGCATGATGAACGGTCTGGACAGTATTGGGCTTACCTTGCAGCACGACGACGCCATTGCCGCTTCTGAAGCAAAACAACCTGCGTTTATGAATTAATCCCCTTGCCCGGTCAAAT > 1:254799/1‑149CTATCGCTTTACCATCGATGCCTTCCGCCGCCACTGCATGATGAACGGTCTGGACAGTATTGGGCTTACCTTGCAGCACGACGACGCCATTGCCGCTTATGAAGCAAAACAACCTGCGTTTATGAATTAATCCCCTTGCCCGGTCAAAT > 1:383883/1‑149 GCTTTACCATCGATGCCTTCCGCCGCCACTGCATGATGAACGGTCTGGACAGTATTGGGCTTACCTTGCAGCACGACGACGCCATTGCCGCTTATGAAGCAAAACAACCTGCGTTTATGAATTAATCCCCTTGCCCGGTCAAATGCCCG > 2:607051/1‑149 CTTTACCATCGATGCCTTCCGCCGCCACTGCATGATGAACGGTCTGGACAGTATTGGGCTTACCTTGCAGCACGACGACGCCATTGCCGCTTATGAAGCAAAACAACCTGCGTTTATGAATTAATCCCCTTGCCCGGTCAAATGACCGG < 1:473927/149‑1 CATCGATGCCTTCCGCCGCCACTGCATGATGAACGGTCTGGACAGTATTGGGCTTACCTTGCAGCACGACGACGCCATTGCCGCTTATGAAGCAAAACAACCTGCGTTTATGAATTAATCCCCTTGCCCGGTCAAATGACCGGGC > 1:336965/1‑145 CATCGATGCCTTCCGCCGCCACTGCATGATGAACGGTCTGGACAGTATTGGGCTTACCTTGCAGCACGACGACGCCATTGCCGCTTATGAAGCAAAACAACCTGCGTTTATGAATTAATCCCCTTGCCCGGTCAAATGACCGGGC < 2:336965/145‑1 GCAAAACAACCTGCGTTTATGAATTAATCCCCTTGCCCGGTCAAATGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAA < 1:37119/121‑1 GCAAAACAACCTGCGTTTATGAATTAATCCCCTTGCCCGGTCAAATGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAA > 2:37119/1‑121 CTTGCCCGGTCAAATGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTC > 1:582166/1‑78 CTTGCCCGGTCAAATGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTC < 2:582166/78‑1 CTATCGCTTTACCATCGATGCCTTCCGCCGCCACTGCATGATGAACGGTCTGGACAGTATTGGGCTTACCTTGCAGCACGACGACGCCATTGCCGCTTATGAAGCAAAACAACCTGCGTTTATGAATTAATCCCCTTGCCCGGTCAAATGACCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_hsa_tpiA/78977‑78821‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaccgggcAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAA > NC_000913_3_hsa_tpiA/78841‑78907 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |