New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 309109741 (1.060)3 (0.080) 3/270 5.7 7.6% intergenic (+43/‑37) endA/rsmE DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase, SAM‑dependent
?NC_000913_3_hsa_tpiA = 3091103 35 (0.960)intergenic (+49/‑31) endA/rsmE DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase, SAM‑dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCGG  >  NC_000913_3_hsa_tpiA/3090952‑3091242
                                                                                                                                                 |                                                                                                                                                 
tCCGGTTACCGACTGGGAGTGCGAGCGCGATGCACGCATCGCGAAGGTGCCGGGCAATCATAACCCGTATGTGCAACGCCCTTGCCAGGCGCGAAAGAGCTAACCTACACTACCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTAc                                                                                                                                                >  2:404960/1‑149 (MQ=255)
tCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTAc                                                                                                                                                <  2:578159/149‑1 (MQ=255)
tCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTAc                                                                                                                                                >  1:320181/1‑149 (MQ=255)
  cGGCTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCAAAGGTGGAGGGCAATCATAATCCGTATGTGTAACGCGCTTGCCAGGCGCTAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACaa                                                                                                                                              <  2:75015/149‑1 (MQ=255)
          gACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTgg                                                                                                                                      >  1:387534/1‑149 (MQ=255)
               ggAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGgaga                                                                                                                                 <  2:84960/149‑1 (MQ=255)
                gAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAgac                                                                                                                                <  1:269884/149‑1 (MQ=255)
                    gCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGacgacg                                                                                                                            <  2:377319/149‑1 (MQ=255)
                     cGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGAcgc                                                                                                                           <  1:510006/149‑1 (MQ=255)
                       aGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCgg                                                                                                                         <  2:614107/149‑1 (MQ=255)
                            gATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGga                                                                                                                                   >  2:472127/1‑134 (MQ=255)
                            gATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGga                                                                                                                                   <  1:472127/134‑1 (MQ=255)
                             aTGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGGCGACGCAGAttttt                                                                                                                   >  1:163549/1‑149 (MQ=255)
                                aaCGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTTCTCGACGCGTTCGACTGCGTGGGGAGACGACGAGGATTTTTAAc                                                                                                                >  1:65845/1‑149 (MQ=255)
                                     atagcgAAGGTGCAGGGCAAGCATGACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGc                                                                                                           <  1:545468/146‑1 (MQ=255)
                                     aTCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGc                                                                                                           <  1:407634/149‑1 (MQ=255)
                                     aTCGCGAAGCTGCAGGGACATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGTATTCTTTTTGTTAACCCCTACCCCATGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGc                                                                                                           <  1:511717/149‑1 (MQ=255)
                                               tGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGAGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCg                                                                                                 >  2:448878/1‑149 (MQ=255)
                                                  aGGGCAATCATAACTCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCAt                                                                                              <  2:527416/149‑1 (MQ=255)
                                                  aGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCCAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCAt                                                                                              <  1:157693/149‑1 (MQ=255)
                                                     gCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTa                                                                                           <  2:320181/149‑1 (MQ=255)
                                                       aaTCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTatc                                                                                         >  1:559244/1‑149 (MQ=255)
                                                       aaTCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTatc                                                                                         <  1:604205/149‑1 (MQ=255)
                                                            tAACCCGTATGTGCAACGCGCTTGGCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg                                                                                                                                     >  2:601426/1‑100 (MQ=255)
                                                            tAACCCGTATGTGCAACGCGCTTGGCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg                                                                                                                                     <  1:601426/100‑1 (MQ=255)
                                                                ccGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTCTCCCCCGCATTTATCATCCTGAAc                                                                                >  1:272822/1‑149 (MQ=255)
                                                                    aTGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACt                                                                            <  2:352703/149‑1 (MQ=255)
                                                                        gCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTCATCATCCTGAACCACTGAcc                                                                        >  1:198753/1‑149 (MQ=255)
                                                                                              aaGAGCGAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCttt                                                  <  1:283196/149‑1 (MQ=255)
                                                                                                        cTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATgc                                        >  2:487672/1‑149 (MQ=255)
                                                                                                         tACCCTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTACGCGTCTCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATgcc                                       <  2:374775/149‑1 (MQ=255)
                                                                                                                     aTTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGTTGCCGCCAACCAtctc                           >  1:530498/1‑149 (MQ=255)
                                                                                                                        ccttttGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCggg                        <  1:281565/147‑1 (MQ=255)
                                                                                                                                 aaCCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGAATTTTCACTATGCGTATCCCCCGCGTTTATCCTCCTGAACCACTGACCAGCCATTCTCACATCGCACTTTGCGAAGATGCCCCCAACCATATCCGACGCGGAccg               >  2:39632/1‑147 (MQ=255)
                                                                                                                                  aCCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGACGATGCCGCCCACCATATCGGCCGCGTACTgc              >  2:127182/1‑149 (MQ=255)
                                                                                                                                       tACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGgcgc                     <  1:347467/137‑1 (MQ=255)
                                                                                                                                       tACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGgcgc                     >  2:347467/1‑137 (MQ=255)
                                                                                                                                       tACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATCACGCCAACCATATCGGGCGCGTCCTacggctg         >  2:122529/1‑145 (MQ=255)
                                                                                                                                           ccACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGc     >  1:271186/1‑149 (MQ=255)
                                                                                                                                            cACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGcc    >  1:670718/1‑149 (MQ=255)
                                                                                                                                              cgcgTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCgg  <  1:95270/149‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                 
TCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCGG  >  NC_000913_3_hsa_tpiA/3090952‑3091242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.